WormBase Tree Display for Gene: WBGene00018921
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| WBGene00018921 | SMap | S_parent | Sequence | F56A6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | sago-2 | Paper_evidence | WBPaper00028800 | |||||
| Person_evidence | WBPerson419 | ||||||||
| Sequence_name | F56A6.1 | ||||||||
| Molecular_name | F56A6.1a | ||||||||
| F56A6.1a.1 | |||||||||
| CE25906 | |||||||||
| F56A6.1b | |||||||||
| CE33401 | |||||||||
| F56A6.1b.1 | |||||||||
| Other_name | wago-6 | Paper_evidence | WBPaper00035262 | ||||||
| Y65B4A.g | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F56A6.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | sago-2 | ||||||||
| DB_info | Database | AceView | gene | 1B93 | |||||
| WormQTL | gene | WBGene00018921 | |||||||
| WormFlux | gene | WBGene00018921 | |||||||
| NDB | locus_tag | CELE_F56A6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018921|UniProtKB=A0A0U1RML5 | |||||||
| family | PTHR22891 | ||||||||
| NCBI | gene | 171653 | |||||||
| RefSeq | protein | NM_001392310.1 | |||||||
| NM_058357.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF316656 | |||||||
| TrEMBL | UniProtAcc | A0A0U1RML5 | |||||||
| A0A0U1RML6 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0U1RML5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Dec 2006 12:13:29 | WBPerson1847 | Name_change | CGC_name | sago-2 | ||||
| 3 | 26 Mar 2014 10:22:27 | WBPerson2970 | Name_change | Other_name | wago-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sago | ||||||||
| Allele (26) | |||||||||
| Possibly_affected_by | WBVar02158862 | ||||||||
| Strain | WBStrain00040439 | ||||||||
| WBStrain00040440 | |||||||||
| WBStrain00040441 | |||||||||
| WBStrain00040446 | |||||||||
| WBStrain00054819 | |||||||||
| WBStrain00054832 | |||||||||
| In_cluster | conserved_RDE-1_cluster | ||||||||
| conserved_miRNA_siRNA_cluster | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001863 | ||||||||
| 00001864 | |||||||||
| 00123898 | |||||||||
| 00123899 | |||||||||
| Ortholog (46) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | sago-2 encodes an Argonaute homolog that is partially required for theamplification phase of RNAi responses; a multiply mutant strain (MAGO),consisting of ppw-1(tm914), sago-1(tm1195), sago-2(tm894),F58G1.1(tm1019), C06A1.4(tm887), and M03D4.6(tm1144) alleles, iscompletely resistant to both germline and somatic RNAi; sago-2 isgenetically redundant with ppw-1 and sago-1, with any one of these genesbeing able to transgenically partially restore the deficiency of MAGOworms; GFP-tagged SAGO-2 binds small secondary siRNAs produced by RNAiagainst GFP; SAGO-2 overexpression does not rescue RNAi defects in rrf-1mutants, and MAGO is not transgenically rescued by rde-1. | Paper_evidence | WBPaper00028800 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 06 Jan 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA endonuclease activity and single-stranded RNA binding activity. Expressed in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56A6.1a | |||||||
| F56A6.1b | |||||||||
| Corresponding_transcript | F56A6.1a.1 | ||||||||
| F56A6.1b.1 | |||||||||
| Other_sequence | CJC01979_1 | ||||||||
| CR03009 | |||||||||
| CBC12181_1 | |||||||||
| CRC07614_1 | |||||||||
| CJC12846_1 | |||||||||
| Associated_feature | WBsf643023 | ||||||||
| WBsf217148 | |||||||||
| WBsf217149 | |||||||||
| WBsf217150 | |||||||||
| Experimental_info | RNAi_result (8) | ||||||||
| Expr_pattern | Expr16414 | ||||||||
| Expr1038163 | |||||||||
| Expr1152383 | |||||||||
| Expr2015582 | |||||||||
| Expr2033817 | |||||||||
| Microarray_results (44) | |||||||||
| Expression_cluster (189) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | I | Position | -18.7723 | Error | 0.068223 | |||
| Positive | Positive_clone | F56A6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
