WormBase Tree Display for Gene: WBGene00004884
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| WBGene00004884 | SMap | S_parent | Sequence | Y54F10AL | |||
|---|---|---|---|---|---|---|---|
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | smg | ||||||
| Reference_allele | WBVar00241424 | ||||||
| Allele (373) | |||||||
| Legacy_information | See also r896 | ||||||
| [C.elegansII] r896 : adult male has swollen bursa, adult hermaphrodite has protruding vulva. ME1. Recessive suppressor of unc-54(r293),tra-2(e1209), etc.; suppression reduced by maternal rescue. unc-54 nonsense RNAs accumulate.OA9: r886 (similar), r1059 (embryonic lethal), r1062 (early larval lethal), r1014 (late larval lethal). [Hodgkin et al. 1989; Pulak and Anderson 1993; TR] | |||||||
| Strain | WBStrain00003601 | ||||||
| WBStrain00034945 | |||||||
| WBStrain00034953 | |||||||
| WBStrain00036497 | |||||||
| WBStrain00004568 | |||||||
| RNASeq_FPKM (74) | |||||||
| GO_annotation (11) | |||||||
| Contained_in_operon | CEOP3846 | ||||||
| Ortholog (42) | |||||||
| Paralog | WBGene00004885 | Caenorhabditis elegans | From_analysis | Panther | |||
| Structured_description | Automated_description | Predicted to enable telomerase RNA binding activity and telomeric DNA binding activity. Involved in embryonic genitalia morphogenesis; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and regulatory ncRNA-mediated post-transcriptional gene silencing. Predicted to be located in cytoplasm. Predicted to be part of telomerase holoenzyme complex. Is an ortholog of human SMG6 (SMG6 nonsense mediated mRNA decay factor). | Paper_evidence | WBPaper00065943 | |||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_CDS | Y54F10AL.2a | |||||
| Y54F10AL.2b | |||||||
| Y54F10AL.2c | |||||||
| Corresponding_CDS_history | Y54F10AL.2c:wp275 | ||||||
| Corresponding_transcript | Y54F10AL.2a.1 | ||||||
| Y54F10AL.2b.1 | |||||||
| Y54F10AL.2c.1 | |||||||
| Other_sequence (14) | |||||||
| Associated_feature (16) | |||||||
| Experimental_info | RNAi_result | WBRNAi00037482 | Inferred_automatically | RNAi_primary | |||
| WBRNAi00066920 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057393 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057394 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000862 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr7046 | ||||||
| Expr1027614 | |||||||
| Expr1032423 | |||||||
| Expr1160827 | |||||||
| Expr2015912 | |||||||
| Expr2034145 | |||||||
| Drives_construct | WBCnstr00004051 | ||||||
| Microarray_results (30) | |||||||
| Expression_cluster (87) | |||||||
| Interaction (13) | |||||||
| Map_info | Map | III | Position | -12.9882 | Error | 0.268963 | |
| Well_ordered | |||||||
| Positive | Positive_clone | Y54F10AL | Inferred_automatically | From CDS info | |||
| From sequence, transcript, pseudogene data | |||||||
| Mapping_data | 2_point | 4700 | |||||
| 6023 | |||||||
| Multi_point | 1633 | ||||||
| 2037 | |||||||
| 2038 | |||||||
| 2039 | |||||||
| 5258 | |||||||
| 4846 | |||||||
| 4812 | |||||||
| Pos_neg_data | 5996 | ||||||
| Landmark_gene | |||||||
| Reference (48) | |||||||
| Method | Gene |
