WormBase Tree Display for Gene: WBGene00003982
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| WBGene00003982 | SMap | S_parent | Sequence | R11H6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pes-9 | Person_evidence | WBPerson266 | |||||
| Sequence_name | R11H6.1 | ||||||||
| Molecular_name | R11H6.1 | ||||||||
| R11H6.1.1 | |||||||||
| CE12770 | |||||||||
| Other_name | CELE_R11H6.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pes-9 | ||||||||
| DB_info | Database | AceView | gene | 5P76 | |||||
| WormQTL | gene | WBGene00003982 | |||||||
| WormFlux | gene | WBGene00003982 | |||||||
| NDB | locus_tag | CELE_R11H6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003982|UniProtKB=O18000 | |||||||
| family | PTHR43270 | ||||||||
| NCBI | gene | 179963 | |||||||
| RefSeq | protein | NM_074209.9 | |||||||
| TREEFAM | TREEFAM_ID | TF300633 | |||||||
| TrEMBL | UniProtAcc | O18000 | |||||||
| UniProt_GCRP | UniProtAcc | O18000 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pes | ||||||||
| Laboratory | NL | ||||||||
| Allele (62) | |||||||||
| Legacy_information | [C.elegansII] pk22 : Tc1 insertion, no known phenotype. pes-1:lacZ expressed in nuclei of 2 - 8 cells in early embryo (28-80 cell stage). Clone UL#80G8, YAC Y40H4. [Young and Hope 1993; UL] | ||||||||
| Strain | WBStrain00001686 | ||||||||
| WBStrain00031780 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031223 | ||||||||
| 00031224 | |||||||||
| 00031225 | |||||||||
| 00031226 | |||||||||
| 00112109 | |||||||||
| 00112110 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00022176 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007507 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007508 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007509 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015509 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | pes-9 encodes a zinc metallopeptidase; pes-9 was originally identified in a promoter trap screen for sequences that direct reporter gene expression in specific cell types during C. elegans development; pes-9 sequences direct expression in a limited number of cells in the early embryo and in putative head and tail hypodermal cells in adults; after some confusion, the pes-9 reporter gene fusion was mapped to R11H6.1. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable peptidase activity. Predicted to be involved in proteolysis. Is an ortholog of human CNDP2 (carnosine dipeptidase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R11H6.1 | |||||||
| Corresponding_transcript | R11H6.1.1 | ||||||||
| Other_sequence (123) | |||||||||
| Associated_feature | WBsf653398 | ||||||||
| WBsf669694 | |||||||||
| WBsf669695 | |||||||||
| WBsf1002071 | |||||||||
| WBsf1002072 | |||||||||
| WBsf1020881 | |||||||||
| WBsf1020882 | |||||||||
| WBsf234967 | |||||||||
| WBsf234968 | |||||||||
| Experimental_info (7) | |||||||||
| Map_info | Map | V | Position | 6.53498 | Error | 0.009634 | |||
| Positive | Positive_clone | R11H6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4959 | |||||||
| 4335 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001752 | ||||||||
| WBPaper00001784 | |||||||||
| WBPaper00014754 | |||||||||
| WBPaper00033995 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039725 | |||||||||
| WBPaper00040287 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
