WormBase Tree Display for Gene: WBGene00000611
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| WBGene00000611 | SMap | S_parent | Sequence | F36A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-34 | Person_evidence | WBPerson345 | |||||
| Sequence_name | F36A4.10 | ||||||||
| Molecular_name | F36A4.10 | ||||||||
| F36A4.10.1 | |||||||||
| CE07185 | |||||||||
| Other_name | ram-4 | Author_evidence | Yu YRL | ||||||
| Chow K-L | |||||||||
| alpha-collagen | Accession_evidence | EMBL | M80650 | ||||||
| CELE_F36A4.10 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | col-34 | ||||||||
| DB_info | Database | AceView | gene | 4F8 | |||||
| WormQTL | gene | WBGene00000611 | |||||||
| WormFlux | gene | WBGene00000611 | |||||||
| NDB | locus_tag | CELE_F36A4.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000611|UniProtKB=P34687 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 177188 | |||||||
| RefSeq | protein | NM_068119.6 | |||||||
| SwissProt | UniProtAcc | P34687 | |||||||
| UniProt_GCRP | UniProtAcc | P34687 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Reference_allele | WBVar00000567 | ||||||||
| Allele (25) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes collagen, adjacent and closely related to collagen gene dpy-13. [von Mende et al. 1988; Bird 1992; CH] | ||||||||
| [C.elegansII] bx25ts : adult males have lumpy, amorphous ray morphology; bx25/+ has variably swollen raytips; fails to complement unlinked ram mutations;hermaphrodite WT. bx25/Df similar. ME3. NA?: bx48, bx56ts (possible alleles). [Baird and Emmons 1990; PB] | |||||||||
| Strain | WBStrain00007170 | ||||||||
| WBStrain00007156 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00044006 | ||||||||
| 00044007 | |||||||||
| 00044008 | |||||||||
| 00044009 | |||||||||
| 00044010 | |||||||||
| 00044011 | |||||||||
| 00107620 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-34 encodes a cuticle collagen protein and is a critical component of male tail cuticle organization affecting ray morphology. | Paper_evidence | WBPaper00001918 | |||||
| WBPaper00003927 | |||||||||
| WBPaper00018023 | |||||||||
| WBPaper00019598 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36A4.10 | |||||||
| Corresponding_transcript | F36A4.10.1 | ||||||||
| Other_sequence (418) | |||||||||
| Associated_feature | WBsf651723 | ||||||||
| WBsf996220 | |||||||||
| WBsf996221 | |||||||||
| WBsf996222 | |||||||||
| WBsf996223 | |||||||||
| WBsf1017213 | |||||||||
| WBsf229953 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00025403 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027592 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014391 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027320 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046451 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (5) | |||||||||
| Drives_construct | WBCnstr00000539 | ||||||||
| WBCnstr00015943 | |||||||||
| WBCnstr00037428 | |||||||||
| Construct_product | WBCnstr00037428 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (216) | |||||||||
| Interaction (146) | |||||||||
| Map_info | Map | IV | Position | 0.004327 | |||||
| Positive | Positive_clone | D2069 | |||||||
| F36A4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | 2_point | 4585 | |||||||
| Multi_point | 1590 | ||||||||
| Pos_neg_data | 4586 | ||||||||
| 4587 | |||||||||
| Reference (28) | |||||||||
| Method | Gene |
