WormBase Tree Display for Gene: WBGene00004474
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| WBGene00004474 | SMap | S_parent | Sequence | T05E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-5 | |||||||
| Sequence_name | T05E11.1 | ||||||||
| Molecular_name | T05E11.1 | ||||||||
| T05E11.1.1 | |||||||||
| CE06360 | |||||||||
| Other_name | CELE_T05E11.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rps-5 | ||||||||
| DB_info | Database | AceView | gene | 4L874 | |||||
| WormQTL | gene | WBGene00004474 | |||||||
| WormFlux | gene | WBGene00004474 | |||||||
| NDB | locus_tag | CELE_T05E11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004474|UniProtKB=P49041 | |||||||
| family | PTHR11205 | ||||||||
| NCBI | gene | 178012 | |||||||
| RefSeq | protein | NM_069676.6 | |||||||
| SwissProt | UniProtAcc | P49041 | |||||||
| TREEFAM | TREEFAM_ID | TF300872 | |||||||
| UniProt_GCRP | UniProtAcc | P49041 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (15) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps5 using blastP | ||||||||
| Strain | WBStrain00003010 | ||||||||
| WBStrain00051379 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP4408 | ||||||||
| Ortholog (111) | |||||||||
| Paralog | WBGene00013324 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rps-5 encodes a small ribosomal subunit S5 protein. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly and translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS5 (ribosomal protein S5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05E11.1 | |||||||
| Corresponding_transcript | T05E11.1.1 | ||||||||
| Other_sequence (423) | |||||||||
| Associated_feature | WBsf652189 | ||||||||
| WBsf668293 | |||||||||
| WBsf230824 | |||||||||
| WBsf230825 | |||||||||
| WBsf230826 | |||||||||
| WBsf230827 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Chronogram798 | ||||||||
| Expr1018101 | |||||||||
| Expr1032277 | |||||||||
| Expr1156134 | |||||||||
| Expr2015529 | |||||||||
| Expr2033764 | |||||||||
| Drives_construct | WBCnstr00003510 | ||||||||
| WBCnstr00008294 | |||||||||
| WBCnstr00008295 | |||||||||
| WBCnstr00021035 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (169) | |||||||||
| Interaction (335) | |||||||||
| Map_info | Map | IV | Position | 4.87549 | Error | 0.003749 | |||
| Positive | Positive_clone | T05E11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003822 | ||||||||
| WBPaper00003858 | |||||||||
| WBPaper00004890 | |||||||||
| WBPaper00005411 | |||||||||
| WBPaper00005725 | |||||||||
| WBPaper00006475 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
