WormBase Tree Display for Gene: WBGene00006873
expand all nodes | collapse all nodes | view schema
WBGene00006873 | SMap | S_parent | Sequence | M142 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | vab-7 | Person_evidence | WBPerson261 | |||||
Sequence_name | M142.4 | ||||||||
Molecular_name | M142.4 | ||||||||
M142.4.1 | |||||||||
CE12432 | |||||||||
Other_name | CELE_M142.4 | Accession_evidence | NDB | BX284603 | |||||
Public_name | vab-7 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | vab | ||||||||
Reference_allele | WBVar00144111 | ||||||||
Allele (137) | |||||||||
Legacy_information | e1562 : hermaphrodite tail abnormal sometimes twisted tail whip never normal often bobbed; sometimes uncoordinated with bent tail; adult male tail deformed. ES3 ME0. NA1. | ||||||||
See also e1562 | |||||||||
[C.elegansII] e1562 : hermaphrodite tail abnormal, sometimes twisted, tail whip never normal often bobbed; variably uncoordinated with bent tail; adult male tail deformed; abnormal positioning of Cpap descendants, etc.ES3 ME0. NA>4: ???. Cloned: encodes homolog of Drosophila homeoprotein even-skipped. Transcripts present in 4 posterior cells during gastrulation. [Hodgkin 1983; CB; NJ] | |||||||||
Strain (12) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Ortholog (41) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | The vab-7 gene encodes an even-skipped-like homeodomain protein that is required for DB motoneuron identity and posterior DB axonal polarity. | Paper_evidence | WBPaper00005153 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in cell fate specification and negative regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in muscle cell; neurons; somatic nervous system; and tail hypodermis. Is an ortholog of human EVX1 (even-skipped homeobox 1) and EVX2 (even-skipped homeobox 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | M142.4 | |||||||
Corresponding_transcript | M142.4.1 | ||||||||
Other_sequence (11) | |||||||||
Associated_feature (20) | |||||||||
Transcription_factor | WBTranscriptionFactor000480 | ||||||||
Experimental_info | RNAi_result (23) | ||||||||
Expr_pattern (14) | |||||||||
Drives_construct (11) | |||||||||
Antibody | WBAntibody00000465 | ||||||||
WBAntibody00001230 | |||||||||
Microarray_results | SMD_M142.4 | ||||||||
193846_at | |||||||||
A_12_P105006 | |||||||||
Aff_M142.4 | |||||||||
GPL13394_WBGene00006873 | |||||||||
GPL13914_M142.4 | |||||||||
GPL14144_M142.4_253-312_0.935_3_A | |||||||||
GPL14144_M142.4_428-487_0.909_13_B | |||||||||
GPL14144_M142.4_560-619_0.906_14_C | |||||||||
GPL19516_CGZ0030138 | |||||||||
GPL21109_M142.4 | |||||||||
GPL3518_CE12432 | |||||||||
GPL8304_CE_WBGene00006873_A | |||||||||
GPL8304_CE_WBGene00006873_B | |||||||||
GPL8304_CE_WBGene00006873_C | |||||||||
GPL8673_M142_4P00002 | |||||||||
GPL8673_M142_4P00157 | |||||||||
GPL8673_M142_4P00387 | |||||||||
GPL9450_M142.4 | |||||||||
cea2.c.21926 | |||||||||
Expression_cluster (102) | |||||||||
Interaction (74) | |||||||||
Map_info | Map | III | Position | 5.5985 | Error | 0.012395 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | eDf2 | |||||||
eDp6 | |||||||||
tDf1 | |||||||||
Positive_clone | M142 | Author_evidence | Ahringer JA | ||||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Negative | Outside_rearr | tDp1 | |||||||
tDp2 | |||||||||
Mapping_data | 2_point | 226 | |||||||
4719 | |||||||||
6180 | |||||||||
6181 | |||||||||
6182 | |||||||||
6183 | |||||||||
Multi_point (25) | |||||||||
Pos_neg_data | 350 | ||||||||
1598 | |||||||||
5728 | |||||||||
5737 | |||||||||
5947 | |||||||||
8371 | |||||||||
8381 | |||||||||
8383 | |||||||||
8392 | |||||||||
8559 | |||||||||
Reference (80) | |||||||||
Remark | Data extracted from Ahringer (1996) : e1562 is rescued by M142, and has sequence change R88op in M142.4, encoding homolog of Drosophila even-skipped | ||||||||
Method | Gene |