WormBase Tree Display for Gene: WBGene00004884
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| WBGene00004884 | SMap | S_parent | Sequence | Y54F10AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smg-6 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y54F10AL.2 | ||||||||
| Molecular_name | Y54F10AL.2a | ||||||||
| Y54F10AL.2a.1 | |||||||||
| CE32984 | |||||||||
| Y54F10AL.2b | |||||||||
| CE27003 | |||||||||
| Y54F10AL.2c | |||||||||
| CE54156 | |||||||||
| Y54F10AL.2b.1 | |||||||||
| Y54F10AL.2c.1 | |||||||||
| Other_name | mab-16 | ||||||||
| est-1 | |||||||||
| NM_065165 | Inferred_automatically | RefSeq | |||||||
| NM_001047420 | Inferred_automatically | RefSeq | |||||||
| NM_065164 | Inferred_automatically | RefSeq | |||||||
| spr-8 | Paper_evidence | WBPaper00033013 | |||||||
| Y54F10AL.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y54F10AL.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | smg-6 | ||||||||
| DB_info | Database | AceView | gene | 3D575 | |||||
| WormQTL | gene | WBGene00004884 | |||||||
| WormFlux | gene | WBGene00004884 | |||||||
| NDB | locus_tag | CELE_Y54F10AL.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004884|UniProtKB=Q9BL68 | |||||||
| family | PTHR15696 | ||||||||
| NCBI | gene | 175367 | |||||||
| RefSeq | protein | NM_065164.8 | |||||||
| NM_001381779.2 | |||||||||
| NM_065165.9 | |||||||||
| TREEFAM | TREEFAM_ID | TF327119 | |||||||
| TrEMBL | UniProtAcc | Q9BL69 | |||||||
| Q1T6W7 | |||||||||
| Q9BL68 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9BL68 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 10 Jan 2008 15:40:33 | WBPerson2970 | Event | Acquires_merge | WBGene00001339 | ||||
| Name_change | Other_name | est-1 | |||||||
| Acquires_merge | WBGene00001339 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smg | ||||||||
| Reference_allele | WBVar00241424 | ||||||||
| Allele (373) | |||||||||
| Legacy_information | See also r896 | ||||||||
| [C.elegansII] r896 : adult male has swollen bursa, adult hermaphrodite has protruding vulva. ME1. Recessive suppressor of unc-54(r293),tra-2(e1209), etc.; suppression reduced by maternal rescue. unc-54 nonsense RNAs accumulate.OA9: r886 (similar), r1059 (embryonic lethal), r1062 (early larval lethal), r1014 (late larval lethal). [Hodgkin et al. 1989; Pulak and Anderson 1993; TR] | |||||||||
| Strain | WBStrain00003601 | ||||||||
| WBStrain00034945 | |||||||||
| WBStrain00034953 | |||||||||
| WBStrain00036497 | |||||||||
| WBStrain00004568 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP3846 | ||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00004885 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Predicted to enable telomerase RNA binding activity and telomeric DNA binding activity. Involved in embryonic genitalia morphogenesis; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and regulatory ncRNA-mediated post-transcriptional gene silencing. Predicted to be located in cytoplasm. Predicted to be part of telomerase holoenzyme complex. Is an ortholog of human SMG6 (SMG6 nonsense mediated mRNA decay factor). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54F10AL.2a | |||||||
| Y54F10AL.2b | |||||||||
| Y54F10AL.2c | |||||||||
| Corresponding_CDS_history | Y54F10AL.2c:wp275 | ||||||||
| Corresponding_transcript | Y54F10AL.2a.1 | ||||||||
| Y54F10AL.2b.1 | |||||||||
| Y54F10AL.2c.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037482 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00066920 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057394 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000862 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7046 | ||||||||
| Expr1027614 | |||||||||
| Expr1032423 | |||||||||
| Expr1160827 | |||||||||
| Expr2015912 | |||||||||
| Expr2034145 | |||||||||
| Drives_construct | WBCnstr00004051 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction | WBInteraction000000050 | ||||||||
| WBInteraction000000051 | |||||||||
| WBInteraction000000052 | |||||||||
| WBInteraction000000748 | |||||||||
| WBInteraction000000786 | |||||||||
| WBInteraction000031742 | |||||||||
| WBInteraction000240533 | |||||||||
| WBInteraction000519062 | |||||||||
| WBInteraction000519074 | |||||||||
| WBInteraction000536768 | |||||||||
| WBInteraction000536771 | |||||||||
| WBInteraction000536775 | |||||||||
| WBInteraction000582129 | |||||||||
| Map_info | Map | III | Position | -12.9882 | Error | 0.268963 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | Y54F10AL | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | 2_point | 4700 | |||||||
| 6023 | |||||||||
| Multi_point | 1633 | ||||||||
| 2037 | |||||||||
| 2038 | |||||||||
| 2039 | |||||||||
| 5258 | |||||||||
| 4846 | |||||||||
| 4812 | |||||||||
| Pos_neg_data | 5996 | ||||||||
| Landmark_gene | |||||||||
| Reference (48) | |||||||||
| Method | Gene |
