WormBase Tree Display for Gene: WBGene00004398

WBGene00004398 SMap: S_parent: Sequence: ZK1290
  Identity: Version: 1
    Name: CGC_name: rol-8 Person_evidence: WBPerson261
      Sequence_name: ZK1290.3
      Molecular_name: ZK1290.3
        ZK1290.3.1
        CE29156
      Other_name: col6 Accession_evidence: EMBL M25477
        col-6 Paper_evidence: WBPaper00001927
        CELE_ZK1290.3 Accession_evidence: NDB BX284602
      Public_name: rol-8
    DB_info: Database: AceView gene 2H835
        WormQTL gene WBGene00004398
        WormFlux gene WBGene00004398
        NDB locus_tag CELE_ZK1290.3
        Panther gene CAEEL|WormBase=WBGene00004398|UniProtKB=P18831
          family PTHR24637
        NCBI gene 174226
        RefSeq protein NM_063181.7
        SwissProt UniProtAcc P18831
        UniProt_GCRP UniProtAcc P18831
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rol
    Reference_allele: WBVar00242674
    Allele (21)
    Legacy_information: sc15 : adults left-handed rollers. NA2.
      [C.elegansII] sc15 : adults left-handed rollers. OA1: sc102. [Kusch and Edgar 1986; BE]
      Transcript present in dauer larvae.
      [C.elegansII] NMK. Transcript abundant only in dauer larvae. Encodes collagen, col-6 family includes col-12,13,14,36,40. [Cox and Hirsh 1985]
    Strain: WBStrain00003803
      WBStrain00003788
      WBStrain00003799
    RNASeq_FPKM (74)
    GO_annotation: 00039606
      00039607
      00039608
      00112775
    Ortholog (32)
    Paralog (163)
    Structured_description: Concise_description: rol-8 encodes a collagen that is enriched in dauer larvae; mutations cause adults to become left-handed rollers. Paper_evidence: WBPaper00000748
            WBPaper00013735
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK1290.3
    Corresponding_CDS_history: ZK1290.3b:wp274
    Corresponding_transcript: ZK1290.3.1
    Other_sequence (223)
    Associated_feature: WBsf988470
      WBsf988471
      WBsf1012548
      WBsf1012549
      WBsf221608
      WBsf221609
  Experimental_info: RNAi_result (16)
    Expr_pattern: Expr762
      Expr1022612
      Expr1032208
      Expr1162631
      Expr2015405
      Expr2033640
    Drives_construct: WBCnstr00035511
    Construct_product: WBCnstr00035511
    Microarray_results (28)
    Expression_cluster (323)
    Interaction: WBInteraction000002507
      WBInteraction000030973
      WBInteraction000031634
      WBInteraction000052489
      WBInteraction000052496
      WBInteraction000052554
      WBInteraction000052555
      WBInteraction000052557
      WBInteraction000052558
      WBInteraction000052564
      WBInteraction000052575
      WBInteraction000052576
      WBInteraction000052577
      WBInteraction000052578
      WBInteraction000052579
      WBInteraction000109575
      WBInteraction000109587
      WBInteraction000112230
      WBInteraction000124583
      WBInteraction000136917
      WBInteraction000138191
      WBInteraction000138215
      WBInteraction000141215
      WBInteraction000145894
      WBInteraction000149813
      WBInteraction000150582
      WBInteraction000152601
      WBInteraction000156520
      WBInteraction000157195
      WBInteraction000171078
      WBInteraction000175263
      WBInteraction000177360
      WBInteraction000182910
      WBInteraction000187317
      WBInteraction000188733
      WBInteraction000189463
      WBInteraction000190821
      WBInteraction000191241
      WBInteraction000202463
      WBInteraction000202944
      WBInteraction000207068
      WBInteraction000210398
      WBInteraction000218319
      WBInteraction000223657
      WBInteraction000236613
      WBInteraction000242355
      WBInteraction000244321
      WBInteraction000245282
      WBInteraction000250490
      WBInteraction000251185
      WBInteraction000251590
      WBInteraction000253980
      WBInteraction000256461
      WBInteraction000260955
      WBInteraction000262422
      WBInteraction000263093
      WBInteraction000264633
      WBInteraction000266616
      WBInteraction000278196
      WBInteraction000278872
      WBInteraction000279069
      WBInteraction000285625
      WBInteraction000285852
      WBInteraction000287783
      WBInteraction000291913
      WBInteraction000292417
      WBInteraction000294138
      WBInteraction000295647
      WBInteraction000300387
      WBInteraction000302659
      WBInteraction000303366
      WBInteraction000305167
      WBInteraction000315491
      WBInteraction000324012
      WBInteraction000325112
      WBInteraction000327522
      WBInteraction000332130
      WBInteraction000344184
      WBInteraction000345044
      WBInteraction000352188
      WBInteraction000358132
      WBInteraction000364354
      WBInteraction000364458
      WBInteraction000367812
      WBInteraction000367899
      WBInteraction000368282
      WBInteraction000373447
      WBInteraction000373451
      WBInteraction000379721
      WBInteraction000379759
      WBInteraction000380899
      WBInteraction000381477
      WBInteraction000385207
      WBInteraction000387658
      WBInteraction000392143
      WBInteraction000393141
      WBInteraction000397834
      WBInteraction000398361
      WBInteraction000398475
      WBInteraction000398717
      WBInteraction000399015
      WBInteraction000404248
      WBInteraction000405256
      WBInteraction000409194
      WBInteraction000410363
      WBInteraction000413228
      WBInteraction000416816
      WBInteraction000420158
      WBInteraction000421153
      WBInteraction000421602
      WBInteraction000441720
      WBInteraction000452436
      WBInteraction000453297
      WBInteraction000456109
      WBInteraction000464393
      WBInteraction000466746
      WBInteraction000467283
      WBInteraction000557808
      WBInteraction000580299
    WBProcess: WBbiopr:00000124
  Map_info: Map: II Position: 0.504391 Error: 0.000111
    Well_ordered
    Positive: Positive_clone: COL6
        ZK1290 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: 2_point: 1523
        2596
        2597
      Multi_point: 836
        837
        1054
        1243
        4733
        4797
        5523
      Pos_neg_data (7)
  Reference (36)
  Method: Gene