WormBase Tree Display for Gene: WBGene00001664
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WBGene00001664 | SMap | S_parent | Sequence | F38E1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | gpa-2 | Person_evidence | WBPerson625 | |||||
Sequence_name | F38E1.5 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_F38E1.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | gpa-2 | ||||||||
DB_info | Database | AceView | gene | 5I853 | |||||
WormQTL | gene | WBGene00001664 | |||||||
WormFlux | gene | WBGene00001664 | |||||||
NDB | locus_tag | CELE_F38E1.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001664|UniProtKB=P22454 | |||||||
family | PTHR10218 | ||||||||
NCBI | gene | 179219 | |||||||
RefSeq | protein | NM_072756.5 | |||||||
SwissProt | UniProtAcc | P22454 | |||||||
UniProt_GCRP | UniProtAcc | P22454 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gpa | ||||||||
Allele (41) | |||||||||
Legacy_information | [C.elegansII] pk19, pk2, pk23, pk24, pk16. Tc1 insertion, also excision derivatives: no obvious phenotype, some reduction in dauer formation, stronger with gpa-3(O). Cloned: gpa-2:lacZ expressed in phasmid neurons, some nerve ring neurons, PVT, sphincter. [Lochrie et al. 1991; PS; NL] | ||||||||
Strain | WBStrain00028899 | ||||||||
WBStrain00028902 | |||||||||
WBStrain00007863 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00039932 | ||||||||
00039933 | |||||||||
00039934 | |||||||||
00039935 | |||||||||
00039936 | |||||||||
00039937 | |||||||||
00039938 | |||||||||
00039939 | |||||||||
00039940 | |||||||||
00039941 | |||||||||
00039942 | |||||||||
00039943 | |||||||||
00039944 | |||||||||
00039945 | |||||||||
00039946 | |||||||||
00039947 | |||||||||
00039948 | |||||||||
00039949 | |||||||||
00109217 | |||||||||
00109218 | |||||||||
00109219 | |||||||||
00109220 | |||||||||
00109221 | |||||||||
00109222 | |||||||||
00109223 | |||||||||
Ortholog (45) | |||||||||
Paralog (21) | |||||||||
Structured_description | Concise_description | gpa-2 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in dauer formation and chemotaxis to water-soluble odorants; it is expressed in the phasmid neurons PHA and PHB, three pharyngeal neurons, one interneuron, three pairs of head neurons, and the anal sphincter muscle. | Curator_confirmed | WBPerson48 | |||||
WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in several processes, including defense response to Gram-negative bacterium; olfactory learning; and positive regulation of gene expression. Located in axon; neuronal cell body; and non-motile cilium. Expressed in anal sphincter muscle; ganglia; and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F38E1.5 | |||||||
Corresponding_transcript | F38E1.5.1 | ||||||||
Associated_feature | WBsf1000639 | ||||||||
WBsf1000640 | |||||||||
WBsf1020020 | |||||||||
WBsf232099 | |||||||||
Experimental_info | RNAi_result | WBRNAi00103344 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046709 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103347 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014559 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014563 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046710 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr538 | ||||||||
Expr539 | |||||||||
Expr3065 | |||||||||
Expr1023128 | |||||||||
Expr1150590 | |||||||||
Expr2012191 | |||||||||
Expr2030427 | |||||||||
Marker43 | |||||||||
Drives_construct | WBCnstr00001699 | ||||||||
WBCnstr00004639 | |||||||||
WBCnstr00004642 | |||||||||
WBCnstr00012427 | |||||||||
WBCnstr00012428 | |||||||||
WBCnstr00036791 | |||||||||
Construct_product | WBCnstr00001699 | ||||||||
WBCnstr00004642 | |||||||||
WBCnstr00012427 | |||||||||
WBCnstr00012428 | |||||||||
WBCnstr00036791 | |||||||||
Antibody | WBAntibody00000769 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (118) | |||||||||
Interaction (17) | |||||||||
Anatomy_function | WBbtf0865 | ||||||||
WBbtf0866 | |||||||||
Map_info | Map | V | Position | 1.34551 | Error | 0.005648 | |||
Positive | Positive_clone | F38E1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
RP#G3/2 | |||||||||
Mapping_data | Multi_point | 4368 | |||||||
Pseudo_map_position | |||||||||
Reference (70) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |