WormBase Tree Display for Gene: WBGene00004478
expand all nodes | collapse all nodes | view schema
| WBGene00004478 | SMap | S_parent | Sequence | F40F8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-9 | |||||||
| Sequence_name | F40F8.10 | ||||||||
| Molecular_name | F40F8.10 | ||||||||
| F40F8.10.1 | |||||||||
| CE05849 | |||||||||
| Other_name | CELE_F40F8.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rps-9 | ||||||||
| DB_info | Database | AceView | gene | 2L416 | |||||
| WormQTL | gene | WBGene00004478 | |||||||
| WormFlux | gene | WBGene00004478 | |||||||
| NDB | locus_tag | CELE_F40F8.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004478|UniProtKB=Q20228 | |||||||
| family | PTHR11831 | ||||||||
| NCBI | gene | 174699 | |||||||
| RefSeq | protein | NM_063983.6 | |||||||
| SwissProt | UniProtAcc | Q20228 | |||||||
| TREEFAM | TREEFAM_ID | TF300795 | |||||||
| UniProt_GCRP | UniProtAcc | Q20228 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (21) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps9 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067533 | ||||||||
| 00067534 | |||||||||
| 00067535 | |||||||||
| 00067536 | |||||||||
| 00067537 | |||||||||
| 00067538 | |||||||||
| 00067539 | |||||||||
| 00067540 | |||||||||
| 00067541 | |||||||||
| 00067542 | |||||||||
| 00067543 | |||||||||
| 00067544 | |||||||||
| 00067545 | |||||||||
| 00067546 | |||||||||
| 00067547 | |||||||||
| 00112976 | |||||||||
| 00112977 | |||||||||
| 00112978 | |||||||||
| 00112979 | |||||||||
| 00112980 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00016740 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | rps-9 encodes a small ribosomal subunit S9 protein. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in cytoplasm; nucleolus; and ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS9 (ribosomal protein S9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F8.10 | |||||||
| Corresponding_transcript | F40F8.10.1 | ||||||||
| Other_sequence (237) | |||||||||
| Associated_feature | WBsf650546 | ||||||||
| WBsf650547 | |||||||||
| WBsf666117 | |||||||||
| WBsf666118 | |||||||||
| WBsf666119 | |||||||||
| WBsf989631 | |||||||||
| WBsf1013165 | |||||||||
| WBsf223894 | |||||||||
| Experimental_info | RNAi_result (45) | ||||||||
| Expr_pattern | Expr1026473 | ||||||||
| Expr1032281 | |||||||||
| Expr1150739 | |||||||||
| Expr2015533 | |||||||||
| Expr2033768 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (162) | |||||||||
| Interaction (251) | |||||||||
| Map_info | Map | II | Position | 3.319 | Error | 0.001084 | |||
| Positive | Positive_clone | F40F8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004651 | ||||||||
| WBPaper00005654 | |||||||||
| WBPaper00032502 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00035925 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00063976 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
