WormBase Tree Display for Gene: WBGene00018961

WBGene00018961 SMap: S_parent: Sequence: F56D1
  Identity: Version: 2
    Name: CGC_name: mrps-16 Person_evidence: WBPerson261
            WBPerson555
      Sequence_name: F56D1.3
      Molecular_name: F56D1.3
        F56D1.3.1
        CE29407
      Other_name: CELE_F56D1.3 Accession_evidence: NDB BX284602
      Public_name: mrps-16
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrps-16
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrps
    Allele (15)
    Strain: WBStrain00002418
    RNASeq_FPKM (74)
    GO_annotation: 00056167
      00056168
      00056169
      00056170
      00056171
      00056172
      00056173
      00056174
      00056175
      00056176
      00056177
      00056178
      00123920
      00123921
      00123922
    Contained_in_operon: CEOP2184
    Ortholog: WBGene00025466 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057357 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00159166 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00151775 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124380 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224731 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g8133 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21941 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8381 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP31.g17230 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11416 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g171 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g7143 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00458.g11087 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-mrps-16 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11398 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      GCK72_006036 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09205 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09225 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g19710 Panagrellus redivivus From_analysis: WormBase-Compara
      chrII_pilon.g4507 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00256089 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302160 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005934 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0033907 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-041010-123 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:14048 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913492 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1582995 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 2. Is an ortholog of human MRPS16 (mitochondrial ribosomal protein S16). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111483 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14048)
  Molecular_info: Corresponding_CDS: F56D1.3
    Corresponding_transcript: F56D1.3.1
    Other_sequence (28)
    Associated_feature: WBsf657597
      WBsf221286
  Experimental_info: RNAi_result: WBRNAi00071138 Inferred_automatically: RNAi_primary
      WBRNAi00048682 Inferred_automatically: RNAi_primary
      WBRNAi00025704 Inferred_automatically: RNAi_primary
      WBRNAi00008876 Inferred_automatically: RNAi_primary
      WBRNAi00000302 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr6218
      Expr1017432
      Expr1038182
      Expr1152441
      Expr2013738
      Expr2031973
    Drives_construct: WBCnstr00003033
      WBCnstr00026162
    Construct_product: WBCnstr00026162
    Microarray_results (20)
    Expression_cluster (98)
    Interaction (79)
  Map_info: Map: II Position: -1.28817 Error: 0.007457
    Positive: Positive_clone: F56D1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00047123
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene