WormBase Tree Display for Gene: WBGene00010089

WBGene00010089 SMap: S_parent: Sequence: F55B12
  Identity: Version: 2
    Name: CGC_name: hpo-31 Paper_evidence: WBPaper00038231
          Person_evidence: WBPerson26
      Sequence_name: F55B12.4
      Molecular_name: F55B12.4
        F55B12.4.1
        CE26815
        F55B12.4.2
      Other_name: CELE_F55B12.4 Accession_evidence: NDB BX284605
      Public_name: hpo-31
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 26 Apr 2011 13:31:47 WBPerson2970 Name_change: CGC_name: hpo-31
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hpo
    Allele (31)
    Strain: WBStrain00049382
    RNASeq_FPKM (74)
    GO_annotation: 00086636
      00086637
      00086638
      00086639
      00086640
      00086641
      00086642
      00086643
      00117582
      00117583
      00117584
    Contained_in_operon: CEOP5404
    Ortholog: WBGene00032585 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00052888 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00141271 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00178022 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00215390 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00224670 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2141 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10876 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10006 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4511 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18065 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g454 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9115 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7173 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2407 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7667 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00488.g11436 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-hpo-31 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14276 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01249.g19581 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_018660 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11855 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10795 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g8950 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50168600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16336 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248815 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00276237 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258107 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292701 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000970 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            SonicParanoid
      FB:FBgn0037369 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040625-176 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:17341 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1917297 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1308857 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable tRNA binding activity. Predicted to be involved in mitochondrial tRNA 3'-end processing and tRNA 3'-terminal CCA addition. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay. Is an ortholog of human TRNT1 (tRNA nucleotidyl transferase 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080209 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:17341)
  Molecular_info: Corresponding_CDS: F55B12.4
    Corresponding_CDS_history: F55B12.4:wp42
    Corresponding_transcript: F55B12.4.1
      F55B12.4.2
    Other_sequence (31)
    Associated_feature: WBsf662056
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1013745
      Expr1034403
      Expr1152241
      Expr2012571
      Expr2030808
    Drives_construct: WBCnstr00031676
    Construct_product: WBCnstr00031676
    Microarray_results (23)
    Expression_cluster (75)
    Interaction (14)
  Map_info: Map: V Position: 5.64395 Error: 0.014982
    Positive: Positive_clone: F55B12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061983
    WBPaper00063971
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene