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WormBase Tree Display for Gene: WBGene00006680

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Name Class

WBGene00006680EvidencePerson_evidenceWBPerson655
SMapS_parentSequenceC52B9
IdentityVersion1
NameCGC_nametwk-28Person_evidenceWBPerson655
Sequence_nameC52B9.6
Molecular_nameC52B9.6
C52B9.6.1
CE35710
Other_nameCELE_C52B9.6Accession_evidenceNDBBX284606
Public_nametwk-28
DB_infoDatabaseAceViewgeneXE894
WormQTLgeneWBGene00006680
WormFluxgeneWBGene00006680
NDBlocus_tagCELE_C52B9.6
PanthergeneCAEEL|WormBase=WBGene00006680|UniProtKB=Q22940
familyPTHR11003
NCBIgene183714
RefSeqproteinNM_076331.6
TrEMBLUniProtAccQ22940
UniProt_GCRPUniProtAccQ22940
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:41WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtwk
Allele (64)
RNASeq_FPKM (74)
GO_annotation00076765
00076766
00076767
00076768
00076769
00076770
00076771
00076772
00076773
00076774
00076775
00114617
00114618
00114619
OrthologWBGene00051857Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034906Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00143347Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00120188Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00147150Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00064316Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00223155Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3089Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3341Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g10057Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19154Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15430Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8846Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2374Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17814Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26626Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20982Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00945.g15063Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-twk-28Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold622.g6210Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00002.g91Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_10165Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_10166Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024227Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04255Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4209Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0258600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18889Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241680Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00265994Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287421Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003629Saccharomyces cerevisiaeFrom_analysisPanther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-100405-2Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoInspector
Panther
RGD:1303091Rattus norvegicusFrom_analysisHieranoid
Inparanoid
Panther
Paralog (47)
Structured_descriptionAutomated_descriptionPredicted to enable outward rectifier potassium channel activity and potassium ion leak channel activity. Predicted to be involved in potassium ion transmembrane transport and stabilization of membrane potential. Predicted to be located in membrane. Expressed in body wall musculature.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC52B9.6
Corresponding_CDS_historyC52B9.6:wp108
Corresponding_transcriptC52B9.6.1
Other_sequence (42)
Associated_featureWBsf653899
WBsf1004895
Experimental_infoRNAi_resultWBRNAi00012297Inferred_automaticallyRNAi_primary
WBRNAi00030075Inferred_automaticallyRNAi_primary
WBRNAi00043016Inferred_automaticallyRNAi_primary
Expr_patternExpr2449
Expr1010391
Expr1146980
Expr2017654
Expr2035794
Drives_constructWBCnstr00010839
WBCnstr00034217
Construct_productWBCnstr00010839
WBCnstr00034217
Microarray_results (20)
Expression_cluster (119)
InteractionWBInteraction000308825
WBInteraction000546929
WBInteraction000546932
Map_infoMapXPosition-7.80204Error0.000667
PositivePositive_cloneC52B9Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026748
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene