WormBase Tree Display for Gene: WBGene00194742

WBGene00194742 SMap: S_parent: Sequence: F37C12
  Identity: Version: 1
    Name: Sequence_name: F37C12.21
      Molecular_name: F37C12.21
        F37C12.21.1
        CE43994
      Other_name: CELE_F37C12.21 Accession_evidence: NDB BX284603
      Public_name: F37C12.21
    DB_info: Database: WormFlux gene WBGene00194742
        NDB locus_tag CELE_F37C12.21
        NCBI gene 13190077
        RefSeq protein NM_001268015.2
        TrEMBL UniProtAcc C8JQP2
        UniProt_GCRP UniProtAcc C8JQP2
    Species: Caenorhabditis elegans
    History: Version_change: 1 21 Aug 2009 11:11:08 WBPerson1867 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (15)
    RNASeq_FPKM (74)
    Ortholog: CSP28.g16428 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23903 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP39.g680 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      chrIII_pilon.g8102 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in AFD; ASER; PLM; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; elt-2; and sir-2.1 based on RNA-seq and microarray studies. Is affected by six chemicals including multi-walled carbon nanotube; Psoralens; and Sirolimus based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F37C12.21
    Corresponding_transcript: F37C12.21.1
  Experimental_info: RNAi_result: WBRNAi00005703 Inferred_automatically: RNAi_primary
      WBRNAi00046607 Inferred_automatically: RNAi_primary
      WBRNAi00014492 Inferred_automatically: RNAi_primary
      WBRNAi00067814 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1150497
      Expr2003438
      Expr2021653
    Microarray_results: SMD_F37C12.10
      GPL19516_CGZ0020258
      GPL21109_F37C12.21
    Expression_cluster: WBPaper00044786:lem-2(tm1582)_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053308:NMD(-)_upregulated_SMD-2_non-binding_ClassIII
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057254:MWCNT_downregulated_mRNA
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066085:sin-3(tm1276)_upregulated
      WBPaper00006465:IV_ethanol_late_repression
      WBPaper00026929:sir-2.1_overexpression_regulated
    SAGE_tag: SAGE:ggtgcatcgc Strand: Antisense
      SAGE:ggtgcatcgcataccac Strand: Antisense
      SAGE:agttcctcat Strand: Sense
        Unambiguously_mapped
      SAGE:caacttccgc Strand: Antisense
      SAGE:agttcctcatactttgg Strand: Sense
        Unambiguously_mapped
  Map_info: Positive: Positive_clone: F37C12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -0.775271
  Method: Gene