WormBase Tree Display for Gene: WBGene00017939

WBGene00017939 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: Sequence_name: F31A3.5
      Molecular_name: F31A3.5
        F31A3.5.1
        CE53407
        F31A3.5.2
      Other_name: CELE_F31A3.5 Accession_evidence: NDB BX284606
      Public_name: F31A3.5
    DB_info: Database: AceView gene XS170
        WormQTL gene WBGene00017939
        WormFlux gene WBGene00017939
        NDB locus_tag CELE_F31A3.5
        NCBI gene 181785
        RefSeq protein NM_001375210.2
        TREEFAM TREEFAM_ID TF339969
        TrEMBL UniProtAcc P90857
        UniProt_GCRP UniProtAcc P90857
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (112)
    RNASeq_FPKM (74)
    Ortholog (22)
    Structured_description: Automated_description: Enriched in several structures, including ABaraapapaa; RIS; anterior ganglion (post); germ line; and mechanosensory neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; eat-2; and npr-1 based on tiling array; RNA-seq; and microarray studies. Is affected by four chemicals including Cry5B; silicon dioxide nanoparticle; and paraquat based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F31A3.5
    Corresponding_CDS_history: F31A3.5:wp108
      F31A3.5:wp271
    Corresponding_transcript: F31A3.5.1
      F31A3.5.2
    Other_sequence: JI165547.1
      Tcir_isotig06435
      CRC07287_1
      CR05744
    Associated_feature: WBsf669995
      WBsf1008959
      WBsf1008960
      WBsf1008961
      WBsf1008962
      WBsf1008963
      WBsf1025063
      WBsf1025064
  Experimental_info: RNAi_result: WBRNAi00031605 Inferred_automatically: RNAi_primary
      WBRNAi00001473 Inferred_automatically: RNAi_primary
      WBRNAi00045981 Inferred_automatically: RNAi_primary
      WBRNAi00014130 Inferred_automatically: RNAi_primary
      WBRNAi00094866 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026370
      Expr1037717
      Expr1149880
      Expr2003166
      Expr2021379
    Drives_construct: WBCnstr00026899
    Construct_product: WBCnstr00026899
    Microarray_results (25)
    Expression_cluster: WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00044037:eat-2_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Oogenic
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051039:germline_enriched
      WBPaper00051558:fog-2(q71)_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061007:HB101_downregulated
      WBPaper00061340:CEPsh
      WBPaper00061340:IL1
      WBPaper00061340:NSM_parent
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061340:T
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:npp-8_4368-E01B7.1_7741
      WBPaper00061527:utx-1_2886-swan-1_2192
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065841:44_0
      WBPaper00065841:44_1
      WBPaper00065841:109_0
      WBPaper00065841:118_0
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:hda-3(ok1991)_upregulated
      WBPaper00066085:sin-3(syb2172)_upregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00025032:cluster_185
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00027111:eri-1(mg366)_upregulated
      WBPaper00027111:rde-3(r459)_upregulated
      WBPaper00027111:rrf-1(pk1417)_upregulated
      WBPaper00027111:rrf-2(ok210)_upregulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00034661:AgNPs_upregulated
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035873:dpy-9_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_F
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00037611:GLD-2-associated
      WBPaper00037695:LD_3-day
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00047070:N2_starvation_downregulated
    Interaction: WBInteraction000404932
      WBInteraction000521065
      WBInteraction000548211
      WBInteraction000584347
  Map_info (2)
  Method: Gene