WormBase Tree Display for Gene: WBGene00017540

WBGene00017540 SMap: S_parent: Sequence: F17E9
  Identity: Version: 1
    Name: Sequence_name: F17E9.3
      Molecular_name: F17E9.3
        F17E9.3.1
        CE34817
      Other_name: CELE_F17E9.3 Accession_evidence: NDB BX284604
      Public_name: F17E9.3
    DB_info: Database: AceView gene 4J119
        WormQTL gene WBGene00017540
        WormFlux gene WBGene00017540
        NDB locus_tag CELE_F17E9.3
        Panther gene CAEEL|WormBase=WBGene00017540|UniProtKB=O61523
          family PTHR21479
        NCBI gene 184619
        RefSeq protein NM_069013.4
        TREEFAM TREEFAM_ID TF352284
        TrEMBL UniProtAcc O61523
        UniProt_GCRP UniProtAcc O61523
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00036059
    Ortholog: WBGene00079164 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00029356 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00031682 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00031650 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00031654 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00073695 Caenorhabditis remanei From_analysis: Inparanoid_8
      chrIV_pilon.g11056 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (34)
    Structured_description: Automated_description: Involved in defense response to Gram-negative bacterium. Expressed in seminal vesicle. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F17E9.3
    Corresponding_CDS_history: F17E9.3:wp105
    Corresponding_transcript: F17E9.3.1
    Associated_feature: WBsf997196
      WBsf228668
  Experimental_info: RNAi_result: WBRNAi00013473 Inferred_automatically: RNAi_primary
      WBRNAi00031080 Inferred_automatically: RNAi_primary
      WBRNAi00091117 Inferred_automatically: RNAi_primary
      WBRNAi00112585 Inferred_automatically: RNAi_primary
      WBRNAi00044895 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14565
      Expr14566
      Expr1023333
      Expr1148866
      Expr2002696
      Expr2020912
    Drives_construct: WBCnstr00027222
      WBCnstr00041165
    Construct_product: WBCnstr00027222
    Microarray_results (15)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00050231:male_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00051558:fog-2(q71)_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053318:Aging_upregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_upregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053657:JU2519_M.humicola-infection_24hr
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055648:male-seminal-vesicle_expressed
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_adult
      WBPaper00056169:rrf-3(pk1426)_upregulated_L4
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00059194:klf-1(RNAi)_regulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060921:cat-2(e1112)_downregulated
      WBPaper00060921:tbh-1(ok1196)_downregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:C10C5.2-Y58A7A.3
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00062167:mbl-1(tm1563)_upregulated
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064375:sid-1(pk3321)_regulated
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065581:hpk-1(pk1393)_downregulated
      WBPaper00065841:11_1
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066204:CdCl2_downregulated_mRNA
      cgc4489_group_13
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00031184:acrylamide_downregulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_F
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00044091:Bpseudomallei_induced_8h
      WBPaper00044091:Bpseudomallei_induced_12h
      WBPaper00044535:male_upregulated
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
      [cgc6390]:male_soma-enriched
    Interaction (17)
  Map_info: Positive: Positive_clone: F17E9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.71274
  Reference: WBPaper00050183
  Method: Gene