WormBase Tree Display for Gene: WBGene00017519

WBGene00017519 SMap: S_parent: Sequence: F16G10
  Identity: Version: 2
    Name: CGC_name: hpo-25 Paper_evidence: WBPaper00038231
          Person_evidence: WBPerson26
      Sequence_name: F16G10.4
      Molecular_name: F16G10.4
        F16G10.4.1
        CE19393
      Other_name: CELE_F16G10.4 Accession_evidence: NDB BX284602
      Public_name: hpo-25
    DB_info: Database: AceView gene 2C659
        WormQTL gene WBGene00017519
        WormFlux gene WBGene00017519
        NDB locus_tag CELE_F16G10.4
        Panther gene CAEEL|WormBase=WBGene00017519|UniProtKB=O76588
          family PTHR21453
        NCBI gene 184579
        RefSeq protein NM_061856.1
        TREEFAM TREEFAM_ID TF322011
        TrEMBL UniProtAcc O76588
        UniProt_GCRP UniProtAcc O76588
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Apr 2011 13:31:47 WBPerson2970 Name_change: CGC_name: hpo-25
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hpo
    Allele (33)
    RNASeq_FPKM (74)
    GO_annotation: 00038533
    Ortholog: WBGene00040996 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040997 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g1498 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g8057 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP38.g7933 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      chrII_pilon.g3665 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (88)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F16G10.4
    Corresponding_transcript: F16G10.4.1
  Experimental_info: RNAi_result: WBRNAi00013420 Inferred_automatically: RNAi_primary
      WBRNAi00044819 Inferred_automatically: RNAi_primary
      WBRNAi00088656 Inferred_automatically: RNAi_primary
      WBRNAi00088763 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018534
      Expr1148783
      Expr2012564
      Expr2030801
    Drives_construct: WBCnstr00027239
    Construct_product: WBCnstr00027239
    Microarray_results (14)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044760:germline_specific
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00045774:clk-1_downregulated_CoQ10_independent
      WBPaper00049266:NaAsO2-Stress_regulated_trx-1(ok1449)
      WBPaper00050370:mys-1(RNAi)_L3_upregulated
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:mdt-15(mg584)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00059739:hira-1(gk835598)_downregulated_L1
      WBPaper00061340:AVH
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:srj-42-srw-113
      WBPaper00062197:mec-8_upregulated
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00065288:mdt-15(tm2182)_downregulated
      cgc4489_group_6
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00048989:N2_allantoin_upregulated
    SAGE_tag: SAGE:tccagatttggcgaatt Strand: Sense
        Unambiguously_mapped
    Interaction (54)
  Map_info: Map: II Position: -13.8308 Error: 0.000632
    Positive: Positive_clone: F16G10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene