WormBase Tree Display for Gene: WBGene00017149

WBGene00017149 SMap: S_parent: Sequence: EGAP4
  Identity: Version: 1
    Name: Sequence_name: EGAP4.1
      Molecular_name: EGAP4.1
        EGAP4.1.1
        CE07012
      Other_name: CELE_EGAP4.1 Accession_evidence: NDB BX284606
      Public_name: EGAP4.1
    DB_info: Database: AceView gene XJ344
        WormQTL gene WBGene00017149
        WormFlux gene WBGene00017149
        NDB locus_tag CELE_EGAP4.1
        NCBI gene 184049
        RefSeq protein NM_077079.5
        SwissProt UniProtAcc Q19077
        TREEFAM TREEFAM_ID TF322066
        UniProt_GCRP UniProtAcc Q19077
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00063401
      00063402
    Ortholog: WBGene00148081 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00083720 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00138809 Caenorhabditis brenneri From_analysis: OMA
      Sp34_X0004600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19633 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00018565 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00019732 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00044578 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00019103 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00019265 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: EGAP4.1
    Corresponding_transcript: EGAP4.1.1
    Associated_feature: WBsf654231
      WBsf654232
      WBsf654233
      WBsf1006225
      WBsf1006226
      WBsf237705
      WBsf237706
      WBsf237707
      WBsf237708
  Experimental_info: RNAi_result: WBRNAi00030517 Inferred_automatically: RNAi_primary
      WBRNAi00043710 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011878
      Expr1147695
      Expr2002175
      Expr2020396
    Drives_construct: WBCnstr00027531
    Construct_product: WBCnstr00027531
    Microarray_results (14)
    Expression_cluster: WBPaper00030922:glycosylated_protein
      WBPaper00032425:down_in_alg-1
      WBPaper00032976:dosage_compensated_genes
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00037950:bodywall-muscle_CoreEnriched
      WBPaper00037950:bodywall-muscle_embryo_enriched
      WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00048988:neuron_expressed
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00054191:H3.3(null)_embryo_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056617:adr-1_upregulated_embryo_transcript
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00060764:swsn-9(ok1354)_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
      WBPaper00061340:BWM_anterior
      WBPaper00061340:DA_DB
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:xbx-3-DH11.5_20397
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:1_1
      WBPaper00065841:14_0
      WBPaper00065841:14_1
      WBPaper00065841:14_2
      WBPaper00065841:107_0
      WBPaper00065841:122_0
      WBPaper00065841:132_0
      WBPaper00065841:136_0
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      cgc4386_cluster_2_6
      cgc4489_group_13
      WBPaper00006465:IV_ethanol_late_repression
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026952:class_F
      WBPaper00027342:alpha-Synuclein(A53T)_downregulated
      WBPaper00027342:alpha-Synuclein(WT)_downregulated
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00036286:Pattern_I
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
      WBPaper00040876:mir-35_downregulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041609:hpl-1_hpl-2_downregulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045673:colistin_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000414183
  Map_info: Positive: Positive_clone: EGAP4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 0.302229
  Method: Gene