WormBase Tree Display for Gene: WBGene00016526

WBGene00016526 SMap: S_parent: Sequence: C39B5
  Identity: Version: 3
    Name: CGC_name: fbxa-8 Person_evidence: WBPerson655
      Sequence_name: C39B5.8
      Molecular_name: C39B5.8
      Other_name: CELE_C39B5.8 Accession_evidence: NDB BX284603
      Public_name: fbxa-8
    DB_info: Database: AceView gene 3D304
        WormQTL gene WBGene00016526
        WormFlux gene WBGene00016526
        NDB locus_tag CELE_C39B5.8
        NCBI gene 183327
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-8
        3 18 Feb 2016 15:25:02 WBPerson1983 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: fbxa
    Allele (59)
    RNASeq_FPKM (74)
    Ortholog (19)
    Paralog (147)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Is affected by several genes including eat-2; sir-2.1; and nhr-49 based on microarray and RNA-seq studies. Is affected by six chemicals including Rifampin; allantoin; and Sirolimus based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: C39B5.8:wp252
    Corresponding_pseudogene: C39B5.8
    Other_sequence: FC817471.1
      Dviv_isotig24801
      SRC08321
      FC811886.1
    Associated_feature: WBsf991484
      WBsf991485
      WBsf1014381
      WBsf1014382
  Experimental_info: Expr_pattern: Expr1020662
      Expr1146191
    Microarray_results (12)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00056167:ifo-1(kc2)_downregulated
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00061040:FW1256_downregulated
      WBPaper00061527:srj-21-srh-32
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031184:acrylamide_downregulated
      WBPaper00034739:RIL17lessRIL14
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:N2_rapamycin_upregulated
  Map_info: Map: III Position: -14.9947 Error: 0.027251
    Positive: Positive_clone: C39B5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene