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WormBase Tree Display for Gene: WBGene00016171

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Name Class

WBGene00016171SMapS_parentSequenceC27F2
IdentityVersion1
NameSequence_nameC27F2.10
Molecular_nameC27F2.10
C27F2.10.1
CE29189
Other_nameCELE_C27F2.10Accession_evidenceNDBBX284603
Public_nameC27F2.10
DB_infoDatabaseAceViewgene3G76
WormQTLgeneWBGene00016171
WormFluxgeneWBGene00016171
NDBlocus_tagCELE_C27F2.10
PanthergeneCAEEL|WormBase=WBGene00016171|UniProtKB=Q95QU0
familyPTHR12732
NCBIgene175675
RefSeqproteinNM_065656.9
SwissProtUniProtAccQ95QU0
TREEFAMTREEFAM_IDTF106136
UniProt_GCRPUniProtAccQ95QU0
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (27)
StrainWBStrain00002042
WBStrain00002506
RNASeq_FPKM (74)
GO_annotation00088623
00088624
00088625
00088626
00088627
00088628
00121863
Ortholog (38)
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus; post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery; and transcription elongation by RNA polymerase II. Predicted to be part of transcription export complex 2. Is an ortholog of human PCID2 (PCI domain containing 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC27F2.10
Corresponding_transcriptC27F2.10.1
Other_sequence (21)
Associated_featureWBsf651026
WBsf992263
WBsf1014825
WBsf226621
WBsf226622
WBsf226623
Experimental_infoRNAi_resultWBRNAi00068054Inferred_automaticallyRNAi_primary
WBRNAi00068011Inferred_automaticallyRNAi_primary
WBRNAi00067104Inferred_automaticallyRNAi_primary
WBRNAi00068771Inferred_automaticallyRNAi_primary
WBRNAi00041358Inferred_automaticallyRNAi_primary
WBRNAi00068772Inferred_automaticallyRNAi_primary
WBRNAi00008451Inferred_automaticallyRNAi_primary
WBRNAi00008017Inferred_automaticallyRNAi_primary
WBRNAi00024655Inferred_automaticallyRNAi_primary
Expr_patternChronogram1197
Expr5361
Expr1023709
Expr1036922
Expr1145397
Expr2001178
Expr2019400
Drives_constructWBCnstr00002826
WBCnstr00004435
WBCnstr00028275
Construct_productWBCnstr00028275
Microarray_results (16)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032031:DConiospora_upregulated_OligoArray_24h
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051311:VGLN-1-interacting
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056855:his-72(uge40)_downregulated
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061340:PLM_ALN_great_grandparent
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:etr-1(lq61)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062554:MAGU-2_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_Ref
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_F
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
[cgc6390]:Cluster_E
[cgc6390]:intrinsic
Interaction (41)
Map_infoPositivePositive_cloneC27F2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-2.2724
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00061947
MethodGene