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WormBase Tree Display for Gene: WBGene00015344

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Name Class

WBGene00015344SMapS_parentSequenceC02E11
IdentityVersion2
NameCGC_namenra-4Paper_evidenceWBPaper00034730
Person_evidenceWBPerson2633
Sequence_nameC02E11.1
Molecular_nameC02E11.1a
C02E11.1a.1
CE28528
C02E11.1b
CE32040
C02E11.1b.1
Other_nameCELE_C02E11.1Accession_evidenceNDBBX284605
Public_namenra-4
DB_infoDatabaseAceViewgene5B508C
5B508
WormQTLgeneWBGene00015344
WormFluxgeneWBGene00015344
NDBlocus_tagCELE_C02E11.1
PanthergeneCAEEL|WormBase=WBGene00015344|UniProtKB=H2KYE0
familyPTHR23303
NCBIgene3565008
RefSeqproteinNM_070966.4
NM_182391.2
SwissProtUniProtAccH2KYE0
TREEFAMTREEFAM_IDTF313696
UniProt_GCRPUniProtAccH2KYE0
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:55WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
218 Aug 2009 11:24:59WBPerson9133Name_changeCGC_namenra-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnra
Allele (118)
StrainWBStrain00001345
WBStrain00001346
WBStrain00001684
RNASeq_FPKM (74)
GO_annotation00021518
00021519
00021520
00021521
00021522
00021523
00021524
Ortholog (42)
Structured_descriptionAutomated_descriptionInvolved in protein-containing complex assembly. Located in endoplasmic reticulum. Expressed in germ line; motor neurons; and non-striated muscle. Is an ortholog of human NOMO1 (NODAL modulator 1); NOMO2 (NODAL modulator 2); and NOMO3 (NODAL modulator 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC02E11.1a
C02E11.1b
Corresponding_transcriptC02E11.1a.1
C02E11.1b.1
Other_sequence (43)
Associated_featureWBsf668733
WBsf999243
WBsf999244
WBsf999245
WBsf1019126
WBsf233312
WBsf233313
Experimental_infoRNAi_resultWBRNAi00114652Inferred_automaticallyRNAi_primary
WBRNAi00028344Inferred_automaticallyRNAi_primary
WBRNAi00039416Inferred_automaticallyRNAi_primary
WBRNAi00009989Inferred_automaticallyRNAi_primary
Expr_pattern (14)
Drives_constructWBCnstr00002238
WBCnstr00002239
WBCnstr00002508
WBCnstr00004266
WBCnstr00004364
WBCnstr00013430
WBCnstr00028916
Construct_productWBCnstr00028916
Microarray_results (26)
Expression_clusterWBPaper00005700:transmembrane_protein
WBPaper00029359_1166
WBPaper00029359_1197
WBPaper00029359_1291
WBPaper00029359_1311
WBPaper00029359_1320
WBPaper00029359_1326
WBPaper00029359_1345
WBPaper00029359_1357
WBPaper00029359_1439
WBPaper00029359_1458
WBPaper00029359_1546
WBPaper00029359_1549
WBPaper00029359_1557
WBPaper00029359_1599
WBPaper00029359_1618
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037047:insoluble_protein
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00038289:oocyte_protein
WBPaper00040965:lipid-droplet_associated_protein
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_downregulated_HeatShock
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050094:glp-1(gf)_upregulated
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050698:DEP-1_interacting
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:seam_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056039:ptrn-1(tm5597)_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056161:male_enriched_siRNA
WBPaper00056284:ints-11(RNAi)_downregulated
WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059440:GLP-1_activated
WBPaper00059471:EGL-43_interacting
WBPaper00059598:HeatShock_upregulated
WBPaper00059605:MUT-16_interacting
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061466:nath-10(icb99)_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:uggt-1_21889-tag-320_20312
WBPaper00061692:acivicin_upregulated
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064201:SNA-3_interacting
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064716:paraquat_downregulated
WBPaper00064992:heat-shock_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:AFD_depleted
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
cgc4386_cluster_6_2
cgc4489_group_8
WBPaper00025032:cluster_22
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00027758:Group_II
WBPaper00032948:FedUp
WBPaper00036123:Fluoranthene_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041002:HQ_3d_2.0mM_Down
WBPaper00041207:CE_dauer_down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_C
Interaction (143)
Map_info (3)
ReferenceWBPaper00032165
WBPaper00034730
WBPaper00035364
WBPaper00038491
WBPaper00041771
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene