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WormBase Tree Display for Gene: WBGene00013150

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Name Class

WBGene00013150SMapS_parentSequenceY53F4B
IdentityVersion2
NameCGC_namepole-4
Sequence_nameY53F4B.3
Molecular_nameY53F4B.3
Y53F4B.3.1
CE22389
Other_nameCELE_Y53F4B.3Accession_evidenceNDBBX284602
Public_namepole-4
DB_infoDatabaseAceViewgene2P254
WormQTLgeneWBGene00013150
WormFluxgeneWBGene00013150
NDBlocus_tagCELE_Y53F4B.3
PanthergeneCAEEL|WormBase=WBGene00013150|UniProtKB=Q9NAC5
familyPTHR10252
NCBIgene175152
RefSeqproteinNM_064686.5
TREEFAMTREEFAM_IDTF103009
TrEMBLUniProtAccQ9NAC5
UniProt_GCRPUniProtAccQ9NAC5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
212 Nov 2018 16:28:49WBPerson1983Name_changeCGC_namepole-4
StatusLive
Gene_info (9)
Molecular_infoCorresponding_CDSY53F4B.3
Corresponding_transcriptY53F4B.3.1
Associated_featureWBsf978593
WBsf990866
WBsf990867
WBsf1013931
WBsf224313
Transcription_factorWBTranscriptionFactor000493
Experimental_infoRNAi_resultWBRNAi00037423Inferred_automaticallyRNAi_primary
WBRNAi00086208Inferred_automaticallyRNAi_primary
WBRNAi00086207Inferred_automaticallyRNAi_primary
WBRNAi00061936Inferred_automaticallyRNAi_primary
WBRNAi00020921Inferred_automaticallyRNAi_primary
WBRNAi00057283Inferred_automaticallyRNAi_primary
Expr_patternExpr1020018
Expr1035839
Expr1160722
Expr2007857
Expr2026099
Drives_constructWBCnstr00029740
Construct_productWBCnstr00029740
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-35_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045050:drh-3 (ne4253)_downregulated
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046338:intestine_unique
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061340:AMso_parent
WBPaper00061340:Neuroblast_IL1_IL2
WBPaper00061340:Neuroblast_PVC_LUA
WBPaper00061340:Parent_of_exc_gland_AVK
WBPaper00061341:28C_24h_downregulated
WBPaper00061527:lsm-4-F49C12.11_819
WBPaper00061699:daf-18(ok480)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_upregulated_protein
WBPaper00064156:lbp-3(overexpress)_downregulated
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064716:paraquat_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065158:AFD_enriched
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_F
WBPaper00037611:RNP-8-associated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040426:CYE-1_CDK-2AF_upregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_23
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(53_min)
[cgc5767]:expression_class_ME
[cgc6390]:mixed_oogenesis-somatic
Interaction (37)
Map_infoMapIIPosition23.8272
PositivePositive_cloneY53F4BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027309
WBPaper00027681
WBPaper00038491
WBPaper00055090
WBPaper00059720
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene