WormBase Tree Display for Gene: WBGene00006489

WBGene00006489 SMap: S_parent: Sequence: ZK856
  Identity: Version: 3
    Name: CGC_name: zhit-3 Person_evidence: WBPerson260
      Sequence_name: ZK856.9
      Molecular_name: ZK856.9
        ZK856.9.1
        CE29017
      Other_name (2)
      Public_name: zhit-3
    DB_info: Database: AceView gene 5K692
        WormQTL gene WBGene00006489
        WormFlux gene WBGene00006489
        NDB locus_tag CELE_ZK856.9
        Panther gene CAEEL|WormBase=WBGene00006489|UniProtKB=Q23644
          family PTHR13483
        NCBI gene 179420
        RefSeq protein NM_073226.5
        TREEFAM TREEFAM_ID TF315656
        TrEMBL UniProtAcc Q23644
        UniProt_GCRP UniProtAcc Q23644
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 04 Apr 2005 15:40:22 WBPerson2970 Event: Acquires_merge: WBGene00014110
        3 30 Sep 2011 14:28:20 WBPerson2970 Name_change: CGC_name: zhit-3
                Other_name: tag-143
      Acquires_merge: WBGene00014110
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zhit
    Allele (33)
    Strain: WBStrain00035544
      WBStrain00034741
    RNASeq_FPKM (74)
    GO_annotation: 00079182
      00079183
      00079184
      00079185
      00079186
      00079187
      00079188
      00079189
    Contained_in_operon: CEOP5248
    Ortholog (32)
    Structured_description: Automated_description: Predicted to be involved in box C/D snoRNP assembly; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and snoRNA localization. Located in nucleus. Is an ortholog of human ZNHIT6 (zinc finger HIT-type containing 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK856.9
    Corresponding_CDS_history: ZK856.9:wp60
    Corresponding_transcript: ZK856.9.1
    Other_sequence (14)
    Associated_feature: WBsf1001073
      WBsf1020277
      WBsf234350
    Transcription_factor: WBTranscriptionFactor000701
  Experimental_info: RNAi_result: WBRNAi00081790 Inferred_automatically: RNAi_primary
      WBRNAi00081828 Inferred_automatically: RNAi_primary
      WBRNAi00059780 Inferred_automatically: RNAi_primary
      WBRNAi00081857 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9511
      Expr1026144
      Expr1032652
      Expr1163209
      Expr1200193
      Expr2018134
      Expr2036271
    Drives_construct: WBCnstr00037896
    Construct_product: WBCnstr00014076
      WBCnstr00037896
    Microarray_results (16)
    Expression_cluster: WBPaper00034640:Phosphorylated_protein
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00041071:spe-44_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046499:AMPK_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056284:ints-5(RNAi)_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059598:HeatShock_downregulated
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061340:M_cell
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:mtr-4_1623-W03F9.10_103
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00035479:daf-16(RNAi)_upregulated
      WBPaper00035560:ahr-1_downregulated
      WBPaper00036286:Pattern_H
      WBPaper00037695:LD_3-day
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041906:I-4317_vs_OP50_10d
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
    Interaction (55)
  Map_info: Map: V Position: 2.36395 Error: 0.00689
    Positive: Positive_clone: ZK856 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5312
        4931
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00027634
    WBPaper00028564
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00060613
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene