Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00006383

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00006383SMapS_parentSequenceY37E11B
IdentityVersion1
NameCGC_nametaf-2
Sequence_nameY37E11B.4
Molecular_nameY37E11B.4
Y37E11B.4.1
CE52319
Other_nameCELE_Y37E11B.4Accession_evidenceNDBBX284604
Public_nametaf-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtaf
Allele (214)
StrainWBStrain00051442
RNASeq_FPKM (74)
GO_annotation (12)
Contained_in_operonCEOP4100
Ortholog (41)
Structured_descriptionConcise_descriptiontaf-2 encodes a member of the peptidase M1 family, a predicted aminopeptidase with similarity to human TBP-associated factor 2.Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable chromatin binding activity and transcription cis-regulatory region binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in embryo development and transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 40. Is an ortholog of human TAF2 (TATA-box binding protein associated factor 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0081205Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11536)
Molecular_infoCorresponding_CDSY37E11B.4
Corresponding_CDS_historyY37E11B.4:wp261
Corresponding_transcriptY37E11B.4.1
Other_sequence (18)
Associated_featureWBsf667840
WBsf229896
WBsf229897
WBsf229898
Experimental_infoRNAi_resultWBRNAi00055919Inferred_automaticallyRNAi_primary
WBRNAi00036806Inferred_automaticallyRNAi_primary
Expr_patternExpr1027812
Expr1032580
Expr1159440
Expr2017212
Expr2035348
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00044037:eat-2_downregulated
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:seam_enriched
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F1_morc-1(tm6048)_downregulated
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:Parents_of_U_F_B_DVA
WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:trcs-2_5724-R11A8.7_17645
WBPaper00062056:dpl-1(n2994)_downregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064716:paraquat_upregulated
WBPaper00065315:mating_upregulated_Day2-7
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00036123:Fluoranthene_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_H
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040858:eQTL_regulated_old
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00056330:mrps-5(RNAi)_downregulated
Interaction (59)
Map_infoMapIVPosition-3.13199Error0.003545
PositivePositive_cloneY37E11BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004890
WBPaper00006475
WBPaper00029038
WBPaper00038491
WBPaper00055090
WBPaper00065308
RemarkSequence connection from [source: A Walker]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene