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WormBase Tree Display for Gene: WBGene00003612

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Name Class

WBGene00003612EvidencePaper_evidenceWBPaper00003416
SMapS_parentSequenceY5H2B
IdentityVersion1
NameCGC_namenhr-13Person_evidenceWBPerson600
Sequence_nameY5H2B.2
Molecular_nameY5H2B.2a
Y5H2B.2a.1
CE26221
Y5H2B.2b
CE36963
Y5H2B.2b.1
Other_nameY5H2B.dCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y5H2B.hCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y5H2B.2Accession_evidenceNDBBX284605
Public_namenhr-13
DB_infoDatabaseAceViewgene5C673
WormQTLgeneWBGene00003612
WormFluxgeneWBGene00003612
NDBlocus_tagCELE_Y5H2B.2
PanthergeneCAEEL|WormBase=WBGene00003612|UniProtKB=Q9N4Q7
familyPTHR46011
NCBIgene178696
RefSeqproteinNM_001029098.6
NM_001029097.6
SwissProtUniProtAccQ9N4Q7
TREEFAMTREEFAM_IDTF321941
UniProt_GCRPUniProtAccQ9N4Q7
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (84)
Legacy_informationNMK. Nuclear hormone receptor superfamily. [AE]
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y50H8 etc. [AE]
StrainWBStrain00034507
WBStrain00034509
WBStrain00036771
RNASeq_FPKM (74)
GO_annotation (12)
Ortholog (26)
Paralog (225)
Structured_descriptionConcise_descriptionnhr-13 encodes a member of the nuclear hormone receptor family.Curator_confirmedWBPerson48
Date_last_updated16 Feb 2005 00:00:00
Automated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in intestine.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY5H2B.2a
Y5H2B.2b
Corresponding_CDS_historyY5H2B.2:wp126
Corresponding_transcriptY5H2B.2a.1
Y5H2B.2b.1
Other_sequenceCRC03067_1
CRC10192_1
CBC15711_1
CR03762
CJC17452_1
CR04047
CBC12541_1
Associated_featureWBsf646695
WBsf978803
WBsf1019267
WBsf1019268
WBsf231482
WBsf231483
WBsf231484
Transcription_factorWBTranscriptionFactor000349
Experimental_infoRNAi_resultWBRNAi00057796Inferred_automaticallyRNAi_primary
WBRNAi00037649Inferred_automaticallyRNAi_primary
WBRNAi00021190Inferred_automaticallyRNAi_primary
WBRNAi00021194Inferred_automaticallyRNAi_primary
Expr_patternExpr7733
Expr1022731
Expr1031659
Expr1161228
Expr2014040
Expr2032280
Drives_constructWBCnstr00012878
WBCnstr00036001
Construct_productWBCnstr00036001
Microarray_results (21)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00040412:germline-regulated_daf-12_target
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00046338:intestine_unique
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_upregulated_endo-siRNA_targets
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058942:henn-1(pk2295)_upregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00061007:HB101_downregulated
WBPaper00061340:Neuroblast_ASJ_AUA
WBPaper00061341:28C_48h_downregulated
WBPaper00061466:nath-10(icb102)_downregulated
WBPaper00061527:C17E7.4-T06D4.1
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_downregulated
cgc4489_group_12
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00030985:Photorhabdus_luminescens_upregulated
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031252:AIN-1_IP_enriched
WBPaper00034739:N2moreDR1350
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00037695:WC_5-day
WBPaper00040858:eQTL_regulated_developing
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
Interaction (31)
WBProcessWBbiopr:00000121
Map_info (3)
ReferenceWBPaper00027309
WBPaper00034500
WBPaper00040998
WBPaper00048196
WBPaper00061653
PictureWBPicture0000013097
RemarkMap V Position -14.960000
cm9g2 matches genomic sequence Y5H2B.2, but nhr-18 is on this Yac as well. sdm 1/12/00
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene