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WormBase Tree Display for Gene: WBGene00001785

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Name Class

WBGene00001785EvidencePerson_evidenceWBPerson1846
SMapS_parentSequenceY32G9A
IdentityVersion1
NameCGC_namegst-37
Sequence_nameY32G9A.1
Molecular_nameY32G9A.1
Y32G9A.1.1
CE21504
Other_nameCELE_Y32G9A.1Accession_evidenceNDBBX284605
Public_namegst-37
DB_infoDatabaseAceViewgene5C401
WormQTLgeneWBGene00001785
WormFluxgeneWBGene00001785
NDBlocus_tagCELE_Y32G9A.1
PanthergeneCAEEL|WormBase=WBGene00001785|UniProtKB=Q9BPM4
familyPTHR11571
NCBIgene189575
RefSeqproteinNM_071131.1
TREEFAMTREEFAM_IDTF353041
TrEMBLUniProtAccQ9BPM4
UniProt_GCRPUniProtAccQ9BPM4
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgst
Allele (18)
StrainWBStrain00052154
RNASeq_FPKM (74)
GO_annotation00092080
Ortholog (49)
Paralog (45)
Structured_descriptionAutomated_descriptionExpressed in gonad; head; and tail. Human HPGDS enables metal ion binding activity; prostaglandin-D synthase activity; and protein homodimerization activity. Is predicted to encode a protein with the following domains: Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, C-terminal domain superfamily; Glutathione S-transferase, C-terminal; and Thioredoxin-like superfamily. Is an ortholog of human HPGDS (hematopoietic prostaglandin D synthase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY32G9A.1
Corresponding_transcriptY32G9A.1.1
Other_sequencePPC00764_1
PP01363
Experimental_infoRNAi_resultWBRNAi00113324Inferred_automaticallyRNAi_primary
WBRNAi00020178Inferred_automaticallyRNAi_primary
WBRNAi00020180Inferred_automaticallyRNAi_primary
WBRNAi00115546Inferred_automaticallyRNAi_primary
WBRNAi00055791Inferred_automaticallyRNAi_primary
WBRNAi00115483Inferred_automaticallyRNAi_primary
Expr_patternExpr8019
Expr1022616
Expr1159323
Drives_constructWBCnstr00000764
Microarray_results (17)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:all-neurons_embryo_enriched
WBPaper00037950:all-neurons_embryo_SelectivelyEnriched
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044316:CH3HgCl_0.75uM_upregulated
WBPaper00044316:CH3HgCl_2.0uM_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00045486:starvation_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00049001:EVN_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
WBPaper00054191:H3.3(null)_L1_downregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00057140:pptr-1(tm3103)_upregulated
WBPaper00057162:meg-3_meg-4_downregulated_sRNA
WBPaper00058711:paraquat_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059754:P.aeruginosa_PA14_upregulated
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00062056:lin-35(n745)_downregulated
WBPaper00062056:met-2(n4256)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
WBPaper00064788:ketamine_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_14
cgc4489_group_18
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00036123:Atrazine_regulated
WBPaper00044091:Bpseudomallei_repressed_8h
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00055899:2,4-Dinitroanisole_regulated
SAGE_tagSAGE:ctataatccgttaccttStrandSense
Unambiguously_mapped
SAGE:ggaaaaacttStrandSense
Unambiguously_mapped
SAGE:ctataatccgStrandSense
Unambiguously_mapped
SAGE:gaaatgatgaStrandAntisense
InteractionWBInteraction000005601
WBInteraction000199139
WBInteraction000242817
WBInteraction000343781
Map_infoMapVPosition-16.7534Error0.014519
PositivePositive_cloneY32G9AInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031184
WBPaper00038491
WBPaper00055090
WBPaper00062289
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene