WormBase Tree Display for Gene: WBGene00012976

WBGene00012976 SMap: S_parent: Sequence: Y48A6C
  Identity: Version: 3
    Name: CGC_name: sup-35 Paper_evidence: WBPaper00033464
          Person_evidence: WBPerson261
      Sequence_name: Y48A6C.3
      Molecular_name: Y48A6C.3
        Y48A6C.3.1
        CE19198
      Other_name: ztf-21 Person_evidence: WBPerson1997
        CELE_Y48A6C.3 Accession_evidence: NDB BX284603
      Public_name: sup-35
    DB_info: Database: AceView gene 3M208
        WormQTL gene WBGene00012976
        WormFlux gene WBGene00012976
        NDB locus_tag CELE_Y48A6C.3
        Panther gene CAEEL|WormBase=WBGene00012976|UniProtKB=Q9XWK6
          family PTHR16056
        NCBI gene 190015
        RefSeq protein NM_067031.2
        TREEFAM TREEFAM_ID TF315854
        TrEMBL UniProtAcc Q9XWK6
        UniProt_GCRP UniProtAcc Q9XWK6
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 Apr 2008 09:32:24 WBPerson2970 Name_change: CGC_name: ztf-21
        3 22 Jul 2009 17:01:22 WBPerson1847 Event: Acquires_merge: WBGene00006340
      Acquires_merge: WBGene00006340
    Status: Live
  Gene_info (11)
  Molecular_info: Corresponding_CDS: Y48A6C.3
    Corresponding_transcript: Y48A6C.3.1
    Associated_feature (11)
    Transcription_factor: WBTranscriptionFactor001097
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr7718
      Expr8993
      Expr1016242
      Expr1035754
      Expr1160322
      Expr2017130
      Expr2035266
    Drives_construct: WBCnstr00012863
      WBCnstr00013661
      WBCnstr00014856
      WBCnstr00014858
    Construct_product: WBCnstr00013661
      WBCnstr00014858
      WBCnstr00017372
      WBCnstr00017373
      WBCnstr00017374
      WBCnstr00017375
      WBCnstr00017376
      WBCnstr00018921
    Microarray_results: SMD_Y48A6C.3
      192651_s_at
      A_12_P113576
      Aff_Y48A6C.3
      GPL13394_WBGene00012976
      GPL13914_Y48A6C.3
      GPL14144_Y48A6C.3_904-963_0.938_1_A
      GPL3518_CE19198
      GPL8673_Y48A6C_3P00898
      GPL8673_Y48A6C_3P00908
      GPL9450_Y48A6C.3
      cea2.p.158129
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00040285:H2S_12hr_upregulated
      WBPaper00044037:eat-2_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046509:lin-35(n745)_upregulated
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050990:seam_enriched
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:Arcade_cell_anterior_and_posterior
      WBPaper00061340:OLQ_grandparent
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:npp-8_4355-afd-1_4796
      WBPaper00062056:efl-1(se1)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-36(we31)_upregulated
      WBPaper00062056:lin-36(we36)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_protein
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00034739:N2lessDR1350
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00037695:WC_5-day
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      [cgc5767]:cluster_28
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(101_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction (22)
  Map_info: Map: III Position: 6.04481 Error: 0.041366
    Well_ordered
    Positive: Positive_clone: Y48A6C Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 2786
      Pos_neg_data: 7377
        7376
    Pseudo_map_position
  Reference (14)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene