WormBase Tree Display for Gene: WBGene00012673

WBGene00012673 SMap: S_parent: Sequence: Y39B6A
  Identity: Version: 2
    Name: CGC_name: dyf-17 Paper_evidence: WBPaper00039866
          Person_evidence: WBPerson2136
      Sequence_name: Y39B6A.11
      Molecular_name: Y39B6A.11
        Y39B6A.11.1
        CE21697
      Other_name: Y39B6B.v Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y39B6A.11 Accession_evidence: NDB BX284605
      Public_name: dyf-17
    DB_info: Database: AceView gene 5T605
        WormQTL gene WBGene00012673
        WormFlux gene WBGene00012673
        NDB locus_tag CELE_Y39B6A.11
        NCBI gene 189733
        RefSeq protein NM_171597.3
        TREEFAM TREEFAM_ID TF315974
        TrEMBL UniProtAcc Q9NET8
        UniProt_GCRP UniProtAcc Q9NET8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 26 Jul 2011 12:43:48 WBPerson2970 Name_change: CGC_name: dyf-17
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dyf
    Allele (73)
    RNASeq_FPKM (74)
    GO_annotation: 00096455
    Ortholog (23)
    Structured_description: Automated_description: Located in ciliary transition zone. Expressed in nervous system. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39B6A.11
    Corresponding_transcript: Y39B6A.11.1
    Other_sequence: HC08186
    Associated_feature: WBsf1003143
      WBsf1021669
  Experimental_info: RNAi_result: WBRNAi00009764 Inferred_automatically: RNAi_primary
      WBRNAi00056162 Inferred_automatically: RNAi_primary
      WBRNAi00036927 Inferred_automatically: RNAi_primary
    Expr_pattern (6)
    Drives_construct: WBCnstr00009066
      WBCnstr00009067
      WBCnstr00009068
      WBCnstr00014187
    Construct_product: WBCnstr00009066
      WBCnstr00009067
      WBCnstr00009068
      WBCnstr00014187
    Microarray_results: SMD_B0413.6
      SMD_Y39B6B.V
      183494_at
      A_12_P116272
      Aff_B0413.E
      Aff_Y39B6.V
      GPL13394_WBGene00012673
      GPL13914_Y39B6A.11
      GPL14144_Y39B6A.11_112-171_0.761_69_C
      GPL14144_Y39B6A.11_19-78_0.865_26_B
      GPL14144_Y39B6A.11_430-489_0.887_18_A
      GPL19516_CGZ0044818
      GPL21109_Y39B6A.11
      GPL3518_CE21697
      GPL8304_CE_WBGene00012673_A
      GPL8304_CE_WBGene00012673_B
      GPL8304_CE_WBGene00012673_C
      GPL8673_Y39B6A_11P00050
      GPL8673_Y39B6A_11P00533
      GPL8673_Y39B6A_11P00861
    Expression_cluster: WBPaper00033070:Elbe_upregulated
      WBPaper00037682:sma-2_downregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044037:eat-2_downregulated
      WBPaper00044037:eat-2_regulated_nhr-62_dependent
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051265:F1_hrde-1(tm1200)_downregulated
      WBPaper00051265:F1_morc-1(tm6048)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053814:25C_downregulated_OP50
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00059605:simr-1(cmp36)_downregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00060951:metr-1(os521)_upregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:ADE
      WBPaper00061340:ADF_AWB
      WBPaper00061340:ASE_parent
      WBPaper00061340:ASG_AWA
      WBPaper00061340:ASH
      WBPaper00061340:AUA
      WBPaper00061340:AWB
      WBPaper00061340:IL1_parent
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_HSN_PHB
      WBPaper00061340:Neuroblast_URX_CEPDx
      WBPaper00061340:OLQ_parent
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:dpy-26-B0205.1
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
      WBPaper00062672:let-418(n3536)_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00065005:sams-4(RNAi)_downregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065158:AFD_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00036130:mir-243_down_regulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00044091:Bpseudomallei_repressed_8h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_19
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(41_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(23_min)
    Interaction (11)
  Map_info: Map: V Position: 20.2044 Error: 0.002059
    Positive: Positive_clone: Y39B6A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00039866
    WBPaper00063946
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene