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WormBase Tree Display for Gene: WBGene00019092

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Name Class

WBGene00019092SMapS_parentSequenceF59A7
IdentityVersion1
NameSequence_nameF59A7.5
Molecular_name (12)
Other_nameCELE_F59A7.5Accession_evidenceNDBBX284605
Public_nameF59A7.5
DB_infoDatabaseAceViewgene5C501
WormQTLgeneWBGene00019092
WormFluxgeneWBGene00019092
NDBlocus_tagCELE_F59A7.5
NCBIgene178683
RefSeqproteinNM_001313194.3
NM_001313193.2
NM_001028830.2
NM_001028831.5
TrEMBLUniProtAccO16279
A0A0K3AVN2
A0A0K3AS56
H2L093
UniProt_GCRPUniProtAccA0A0K3AS56
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (68)
RNASeq_FPKM (74)
Ortholog (12)
Structured_descriptionAutomated_descriptionEnriched in amphid sheath cell and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and daf-12 based on RNA-seq and microarray studies. Is affected by nine chemicals including rotenone; Psoralens; and allantoin based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDS (4)
Corresponding_CDS_historyF59A7.5b:wp249
Corresponding_transcriptF59A7.5a.1
F59A7.5b.1
F59A7.5c.1
F59A7.5d.1
Other_sequenceCJC06764_1
ACC23490_1
EY459494.1
CBC04208_1
Associated_featureWBsf999434
WBsf999435
WBsf999436
WBsf999437
WBsf1019249
WBsf1019250
WBsf231461
Experimental_infoRNAi_resultWBRNAi00033169Inferred_automaticallyRNAi_primary
WBRNAi00001390Inferred_automaticallyRNAi_primary
WBRNAi00049121Inferred_automaticallyRNAi_primary
Expr_patternExpr1025093
Expr1152867
Expr2004447
Expr2022670
Drives_constructWBCnstr00026070
Construct_productWBCnstr00026070
Microarray_results (25)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049489:AMsh-glia_enriched
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050990:NMDA-neuron_enriched
WBPaper00050990:NMDA-neuron_expressed
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00053888:drh-3(rrr2)_downregulated
WBPaper00055226:ADR-2_target_adr-1(tm668)
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:AMsh
WBPaper00061340:RIM
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061357:mett-10(ok2204)_downregulated_NA22
WBPaper00061405:S.aureus_downregulated_starvation
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:F40F8.4-C33G8.4
WBPaper00061651:AMsh_enriched
WBPaper00061651:PHsh_enriched
WBPaper00061651:RMH_enriched
WBPaper00061651:VA12_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064871:hypoxia_downregulated_F2
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065225:nhr-42(tm1375)_upregulated_uninfected
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065841:45_0
WBPaper00065841:92_0
WBPaper00065841:94_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
cgc4489_group_13
WBPaper00032948:StarveUp2
WBPaper00035227:heat_shock_regulated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036286:Pattern_I
WBPaper00038172:tax-6null_up_regulated
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00047070:N2_starvation_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc6390]:Cluster_A
InteractionWBInteraction000198816
WBInteraction000209589
WBInteraction000222055
WBInteraction000222858
WBInteraction000249625
WBInteraction000257621
WBInteraction000278716
WBInteraction000298409
WBInteraction000317347
WBInteraction000334997
WBInteraction000341799
WBInteraction000344202
WBInteraction000349988
WBInteraction000352428
WBInteraction000363917
WBInteraction000366538
WBInteraction000372231
WBInteraction000372683
WBInteraction000374418
WBInteraction000378603
WBInteraction000390017
WBInteraction000390449
WBInteraction000395737
WBInteraction000405254
WBInteraction000412710
WBInteraction000418973
WBInteraction000422508
WBInteraction000427108
WBInteraction000427760
WBInteraction000429592
WBInteraction000432805
WBInteraction000432943
WBInteraction000435473
WBInteraction000436713
WBInteraction000439447
WBInteraction000441705
WBInteraction000447034
WBInteraction000451151
Map_infoPositivePositive_cloneF59A7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV-16.3267
MethodGene