WormBase Tree Display for Gene: WBGene00000747

WBGene00000747 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F46C8
  Identity: Version: 1
    Name: CGC_name: col-174 Person_evidence: WBPerson345
      Sequence_name: F46C8.2
      Molecular_name: F46C8.2
        F46C8.2.1
        CE04577
      Other_name: CELE_F46C8.2 Accession_evidence: NDB BX284606
      Public_name: col-174
    DB_info: Database: AceView gene XI167
        WormQTL gene WBGene00000747
        WormFlux gene WBGene00000747
        NDB locus_tag CELE_F46C8.2
        Panther gene CAEEL|WormBase=WBGene00000747|UniProtKB=Q9GYP3
          family PTHR24637
        NCBI gene 181014
        RefSeq protein NM_076875.8
        TrEMBL UniProtAcc Q9GYP3
        UniProt_GCRP UniProtAcc Q9GYP3
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (41)
    RNASeq_FPKM (74)
    GO_annotation: 00092848
      00092849
      00092850
      00107734
    Ortholog (32)
    Paralog (163)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F46C8.2
    Corresponding_transcript: F46C8.2.1
    Other_sequence (32)
    Associated_feature: WBsf648313
      WBsf655191
      WBsf1005874
      WBsf1023265
      WBsf235943
      WBsf235944
  Experimental_info: RNAi_result: WBRNAi00032360 Inferred_automatically: RNAi_primary
      WBRNAi00047515 Inferred_automatically: RNAi_primary
      WBRNAi00015082 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025993
      Expr1030456
      Expr1151354
      Expr2010368
      Expr2028611
    Drives_construct: WBCnstr00037311
    Construct_product: WBCnstr00037311
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
      WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00049018:ham-3(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00054410:set-9(rw5)_downregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Metformin_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_adult
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058925:acox-1.1(ok2257)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059253:sucrose_downregulated
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059816:crh-1(n3315)_uprgulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060273:vrk-1(RNAi)_downregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-extract_1h_regulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:HB115_upregulated
      WBPaper00061007:M.braciatum_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:AMso
      WBPaper00061340:ant_arc_V
      WBPaper00061340:hyp1V_and_ant_arc_V
      WBPaper00061340:ILso
      WBPaper00061340:T
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:R12E2.14_75-R12E2.15
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062056:lin-37(n758)_downregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)_upregulated
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064107:lin-35(n745)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00064716:paraquat_upregulated
      WBPaper00064728:cpl-1(W32AY35A)_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065074:glna(-)_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065158:AFD_depleted
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:151
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065841:34_1
      WBPaper00065841:82_1
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066004:ceh-14(ch3)_downregulated
      WBPaper00066004:tdp-1(csb38)_upregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_23
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00032948:FedUp
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_G
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040963:Q50_up
      WBPaper00040963:TA300_up
      WBPaper00041207:CE_dauer_down
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc6390]:Cluster_A
      [cgc6390]:male_sex-enriched
    Interaction: WBInteraction000107046
      WBInteraction000125151
      WBInteraction000137744
      WBInteraction000159558
      WBInteraction000159920
      WBInteraction000164005
      WBInteraction000188263
      WBInteraction000192938
      WBInteraction000199974
      WBInteraction000205771
      WBInteraction000205986
      WBInteraction000209387
      WBInteraction000211432
      WBInteraction000214642
      WBInteraction000218668
      WBInteraction000218915
      WBInteraction000229447
      WBInteraction000235897
      WBInteraction000242495
      WBInteraction000247988
      WBInteraction000256057
      WBInteraction000256434
      WBInteraction000266721
      WBInteraction000266802
      WBInteraction000271930
      WBInteraction000281913
      WBInteraction000288211
      WBInteraction000297376
      WBInteraction000308881
      WBInteraction000311763
      WBInteraction000316107
      WBInteraction000321411
      WBInteraction000322306
      WBInteraction000324970
      WBInteraction000330641
      WBInteraction000332588
      WBInteraction000336906
      WBInteraction000350225
      WBInteraction000351269
      WBInteraction000357603
      WBInteraction000358547
      WBInteraction000359248
      WBInteraction000360549
      WBInteraction000370413
      WBInteraction000372271
      WBInteraction000374076
      WBInteraction000383149
      WBInteraction000385070
      WBInteraction000386864
      WBInteraction000408669
      WBInteraction000413016
      WBInteraction000414908
      WBInteraction000415925
      WBInteraction000420126
      WBInteraction000421130
      WBInteraction000440327
      WBInteraction000449317
      WBInteraction000451767
      WBInteraction000459502
      WBInteraction000463690
      WBInteraction000464209
      WBInteraction000473458
  Map_info: Map: X Position: -1.59867
    Positive: Positive_clone: F46C8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065080
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene