WormBase Tree Display for Gene: WBGene00021671
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WBGene00021671 | SMap | S_parent | Sequence | Y48G1BM | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | Sequence_name | Y48G1BM.6 | |||||
Molecular_name | Y48G1BM.6a | ||||||
Y48G1BM.6a.1 | |||||||
CE54310 | |||||||
Y48G1BM.6d | |||||||
Other_name | CELE_Y48G1BM.6 | Accession_evidence | NDB | BX284601 | |||
Public_name | Y48G1BM.6 | ||||||
DB_info | Database | AceView | gene | 1A708 | |||
WormQTL | gene | WBGene00021671 | |||||
WormFlux | gene | WBGene00021671 | |||||
NDB | locus_tag | CELE_Y48G1BM.6 | |||||
NCBI | gene | 190039 | |||||
RefSeq | protein | NR_175829.1 | |||||
NM_001393046.1 | |||||||
RNAcentral | URSid | URS000242F08F | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Acquires_merge | WBGene00021670 | ||||||
Split_into | WBGene00306121 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Allele (67) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00157740 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||
WBGene00154700 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00153849 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
CSP21.g5461 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||
CSP31.g20487 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||
CSP31.g25463 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||
CSP31.g4464 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||
CSP38.g18049 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||
Pan_g7224 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||
Paralog (20) | |||||||
Structured_description | Automated_description | Enriched in hermaphrodite gonad; neurons; retrovesicular ganglion; and vulval cell based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including nuo-6; mut-16; and mut-2 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including multi-walled carbon nanotube; Alovudine; and metformin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info (5) | |||||||
Experimental_info | RNAi_result | WBRNAi00055472 | Inferred_automatically | RNAi_primary | |||
WBRNAi00056947 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056946 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00058283 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00019988 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1013491 | ||||||
Expr1039488 | |||||||
Expr1160392 | |||||||
Expr2007682 | |||||||
Expr2025924 | |||||||
Microarray_results (16) | |||||||
Expression_cluster (154) | |||||||
Interaction | WBInteraction000373465 | ||||||
WBInteraction000373467 | |||||||
WBInteraction000373469 | |||||||
Map_info | Positive | Positive_clone | Y48G1BM | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Interpolated_map_position | I | -19.1182 | |||||
Remark | [2020-11-10T23:53:02.969Z WBPerson51134] Gene Split creating Y48G1BM.10 WBGene00306121: Seems to be a fusion of CDS Y48G1BM.6 and CDS Y48G1BM.10 | Curator_confirmed | WBPerson51134 | ||||
[2020-11-10T23:54:39.038Z WBPerson51134] Gene Updated: Biotype changed to CDS | Curator_confirmed | WBPerson51134 | |||||
Method | Gene |