WormBase Tree Display for Gene: WBGene00015477

WBGene00015477 SMap: S_parent: Sequence: C05D10
  Identity: Version: 2
    Name: CGC_name: attf-4 Person_evidence: WBPerson260
            WBPerson1997
      Sequence_name: C05D10.1
      Molecular_name: C05D10.1a
        C05D10.1a.1
        CE24783
        C05D10.1b
        CE01124
        C05D10.1c
        CE37698
        C05D10.1b.1
        C05D10.1c.1
      Other_name: CELE_C05D10.1 Accession_evidence: NDB BX284603
      Public_name: attf-4
    DB_info: Database: AceView gene 3H173
        WormQTL gene WBGene00015477
        WormFlux gene WBGene00015477
        NDB locus_tag CELE_C05D10.1
        Panther gene CAEEL|WormBase=WBGene00015477|UniProtKB=Q11178
          family PTHR36522
        NCBI gene 175858
        RefSeq protein NM_001379742.1
            NM_171147.7
            NM_001379741.2
        SwissProt UniProtAcc Q11178
        TREEFAM TREEFAM_ID TF321832
        UniProt_GCRP UniProtAcc Q11178
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 22 Sep 2011 11:35:55 WBPerson2970 Name_change: CGC_name: attf-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: attf
    Allele (41)
    Strain: WBStrain00031990
      WBStrain00030081
      WBStrain00030082
    RNASeq_FPKM (74)
    GO_annotation: 00057328
    Ortholog: WBGene00055381 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00039999 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00133377 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00190865 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222235 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5479 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14269 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6759 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21023 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16233 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2470 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15721 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3262 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g5576 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5371 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00218.g7254 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-attf-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold619.g6101 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03074.g28976 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08832 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010817 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11667 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21936 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30146000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7853 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242302 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00275849 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Expressed in head muscle; hypodermis; pharyngeal-intestinal valve; tail neurons; and ventral nerve cord. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C05D10.1a
      C05D10.1b
      C05D10.1c
    Corresponding_CDS_history: C05D10.1b:wp275
    Corresponding_transcript: C05D10.1a.1
      C05D10.1b.1
      C05D10.1c.1
    Other_sequence (13)
    Associated_feature (14)
    Gene_product_binds (151)
    Transcription_factor: WBTranscriptionFactor000952
  Experimental_info: RNAi_result: WBRNAi00039719 Inferred_automatically: RNAi_primary
      WBRNAi00010192 Inferred_automatically: RNAi_primary
      WBRNAi00028487 Inferred_automatically: RNAi_primary
      WBRNAi00005561 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9741
      Expr9744
      Expr10218
      Expr10219
      Expr1026965
      Expr1036617
      Expr1143817
      Expr1200070
      Expr1200071
      Expr1200072
      Expr2009517
      Expr2027754
    Drives_construct: WBCnstr00014261
      WBCnstr00014264
      WBCnstr00015188
      WBCnstr00028816
    Construct_product: WBCnstr00016574
      WBCnstr00016714
      WBCnstr00028816
    Microarray_results (29)
    Expression_cluster (122)
    Interaction (28)
  Map_info: Map: III Position: -1.42234 Error: 0.000479
    Positive: Positive_clone: C05D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene