WormBase Tree Display for Gene: WBGene00003983
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| WBGene00003983 | SMap | S_parent | Sequence | Y46G5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name (5) | |||||||||
| DB_info | Database | AceView | gene | 2N136 | |||||
| WormQTL | gene | WBGene00003983 | |||||||
| WormFlux | gene | WBGene00003983 | |||||||
| NDB | locus_tag | CELE_Y46G5A.27 | |||||||
| NCBI | gene | 174920 | |||||||
| RefSeq | protein | NM_064331.7 | |||||||
| SwissProt | UniProtAcc | P41991 | |||||||
| TREEFAM | TREEFAM_ID | TF322543 | |||||||
| UniProt_GCRP | UniProtAcc | P41991 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pes | ||||||||
| Allele (58) | |||||||||
| Legacy_information | [C.elegansII] pk74 : Tc1 insertion, no known phenotype. No maternal transcripts, zygotic transcripts present transiently in each somatic lineage from 4-cell stage; pes-10:lacZ expression similar. [Seydoux and Fire 1994; PD] | ||||||||
| Strain (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00045723 | ||||||||
| 00045724 | |||||||||
| 00045725 | |||||||||
| 00045726 | |||||||||
| 00045727 | |||||||||
| 00045728 | |||||||||
| 00045729 | |||||||||
| 00045730 | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00012916 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013278 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007769 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011049 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46G5A.27 | |||||||
| Corresponding_transcript | Y46G5A.27.1 | ||||||||
| Associated_feature | WBsf650674 | ||||||||
| WBsf650675 | |||||||||
| WBsf224114 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056686 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr565 | ||||||||
| Expr586 | |||||||||
| Expr1010766 | |||||||||
| Expr1031903 | |||||||||
| Expr1160155 | |||||||||
| Expr2014831 | |||||||||
| Expr2033065 | |||||||||
| Drives_construct | WBCnstr00000079 | ||||||||
| WBCnstr00000224 | |||||||||
| WBCnstr00000226 | |||||||||
| WBCnstr00000234 | |||||||||
| WBCnstr00000990 | |||||||||
| WBCnstr00001886 | |||||||||
| WBCnstr00004692 | |||||||||
| WBCnstr00004693 | |||||||||
| WBCnstr00004694 | |||||||||
| WBCnstr00006913 | |||||||||
| WBCnstr00007018 | |||||||||
| WBCnstr00007019 | |||||||||
| WBCnstr00007843 | |||||||||
| WBCnstr00016593 | |||||||||
| WBCnstr00018236 | |||||||||
| WBCnstr00020011 | |||||||||
| WBCnstr00021241 | |||||||||
| WBCnstr00021246 | |||||||||
| WBCnstr00021613 | |||||||||
| WBCnstr00021614 | |||||||||
| WBCnstr00022845 | |||||||||
| WBCnstr00041701 | |||||||||
| WBCnstr00041703 | |||||||||
| WBCnstr00041706 | |||||||||
| WBCnstr00041709 | |||||||||
| WBCnstr00041742 | |||||||||
| WBCnstr00042244 | |||||||||
| WBCnstr00042674 | |||||||||
| WBCnstr00042678 | |||||||||
| WBCnstr00042681 | |||||||||
| Construct_product | WBCnstr00000234 | ||||||||
| WBCnstr00017356 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | II | Position | 11.8113 | Error | 0.091506 | |||
| Positive | Positive_clone | Y46G5A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (69) | |||||||||
| Remark | This gene was previously connected to F56G4.3 but this may have been in error. The new sequence connection (to Y46G5A.27) is based on details in an EMBL entry. [krb 030512] | Accession_evidence | EMBL | U15304 | |||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
