WormBase Tree Display for Gene: WBGene00021476
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WBGene00021476 | SMap | S_parent | Sequence | Y39G10AR | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nsun-4 | Person_evidence | WBPerson8352 | |||||
Sequence_name | Y39G10AR.21 | ||||||||
Molecular_name | Y39G10AR.21a | ||||||||
Y39G10AR.21a.1 | |||||||||
CE28981 | |||||||||
Y39G10AR.21b | |||||||||
CE49666 | |||||||||
Y39G10AR.21c | |||||||||
CE49707 | |||||||||
Y39G10AR.21b.1 | |||||||||
Y39G10AR.21c.1 | |||||||||
Other_name | CELE_Y39G10AR.21 | Accession_evidence | NDB | BX284601 | |||||
Public_name | nsun-4 | ||||||||
DB_info | Database | AceView | gene | 1C879 | |||||
WormQTL | gene | WBGene00021476 | |||||||
WormFlux | gene | WBGene00021476 | |||||||
NDB | locus_tag | CELE_Y39G10AR.21 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021476|UniProtKB=Q95XR2 | |||||||
family | PTHR22808 | ||||||||
NCBI | gene | 171790 | |||||||
RefSeq | protein | NM_001306436.3 | |||||||
NM_001306435.3 | |||||||||
NM_058557.4 | |||||||||
KEGG | KEGG_id | 2.1.1.- | |||||||
NemaPath | KEGG_id | 2.1.1.- | |||||||
SwissProt | UniProtAcc | Q95XR2 | |||||||
UniProt_GCRP | UniProtAcc | Q95XR2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 20 Feb 2015 13:16:53 | WBPerson2970 | Name_change | CGC_name | nsun-4 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nsun | ||||||||
Allele (64) | |||||||||
Strain | WBStrain00055506 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Contained_in_operon | CEOP1040 | ||||||||
Ortholog (34) | |||||||||
Paralog | WBGene00021686 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | Y39G10AR.21 is orthologous to human NSUN4, a putative S-adenosyl-L-methionine-dependent methyl-transferase. | Curator_confirmed | WBPerson324 | |||||
WBPerson1823 | |||||||||
WBPerson567 | |||||||||
Date_last_updated | 30 May 2012 00:00:00 | ||||||||
Automated_description | Enables rRNA (cytosine-C5-)-methyltransferase activity and tRNA (cytosine-5-)-methyltransferase activity. Predicted to be involved in rRNA methylation and tRNA methylation. Predicted to be located in mitochondrion. Is an ortholog of human NSUN4 (NOP2/Sun RNA methyltransferase 4). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00056274 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00004599 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1021465 | ||||||||
Expr1039387 | |||||||||
Expr1159756 | |||||||||
Expr2014504 | |||||||||
Expr2032743 | |||||||||
Drives_construct | WBCnstr00024538 | ||||||||
Construct_product | WBCnstr00024538 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (89) | |||||||||
SAGE_tag | SAGE:acactccact | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
SAGE:acactccactgggagcc | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ggggtactgc | Strand | Antisense | |||||||
SAGE:agatttcaaa | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gaaacgatagaggcctg | Strand | Antisense | |||||||
SAGE:gaaacgatag | Strand | Antisense | |||||||
SAGE:ggggtactgcataaata | Strand | Antisense | |||||||
SAGE:cttaaccttt | Strand | Antisense | |||||||
Interaction (62) | |||||||||
Map_info | Positive | Positive_clone | Y39G10AR | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | I | -9.42428 | |||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00060731 | |||||||||
WBPaper00060738 | |||||||||
Method | Gene |