WormBase Tree Display for Gene: WBGene00017120
expand all nodes | collapse all nodes | view schema
| WBGene00017120 | SMap | S_parent | Sequence | E04A4 | ||
|---|---|---|---|---|---|---|
| Identity (6) | ||||||
| Gene_info | Biotype | SO:0001217 | ||||
| Gene_class | tctn | |||||
| Allele (18) | ||||||
| Strain | WBStrain00032915 | |||||
| RNASeq_FPKM (74) | ||||||
| GO_annotation | 00032516 | |||||
| 00032517 | ||||||
| 00032518 | ||||||
| 00032519 | ||||||
| Contained_in_operon | CEOP4148 | |||||
| Ortholog (24) | ||||||
| Structured_description | Automated_description | Predicted to be involved in cilium assembly. Predicted to be located in ciliary transition zone. Human ortholog(s) of this gene implicated in Joubert syndrome 13; Joubert syndrome 18; and orofaciodigital syndrome IV. Is an ortholog of human TCTN1 (tectonic family member 1) and TCTN3 (tectonic family member 3). | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Disease_info | Potential_model | DOID:0110987 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24519) | |
| DOID:0110982 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26113) | |||
| DOID:0060374 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24519) | |||
| Molecular_info | Corresponding_CDS | E04A4.6 | ||||
| Corresponding_CDS_history | E04A4.6:wp227 | |||||
| Corresponding_transcript | E04A4.6.1 | |||||
| Other_sequence | ACC09020_1 | |||||
| EY461619.1 | ||||||
| Associated_feature | WBsf651774 | |||||
| WBsf667904 | ||||||
| Experimental_info | RNAi_result | WBRNAi00012682 | Inferred_automatically | RNAi_primary | ||
| WBRNAi00043666 | Inferred_automatically | RNAi_primary | ||||
| Expr_pattern | Expr12582 | |||||
| Expr1013020 | ||||||
| Expr1037353 | ||||||
| Expr1147650 | ||||||
| Expr2017365 | ||||||
| Expr2035502 | ||||||
| Construct_product | WBCnstr00022310 | |||||
| Microarray_results (17) | ||||||
| Expression_cluster (130) | ||||||
| Interaction | WBInteraction000317863 | |||||
| WBInteraction000390963 | ||||||
| Map_info | Map | IV | Position | 0.770768 | ||
| Positive | Positive_clone | E04A4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
| Pseudo_map_position | ||||||
| Reference | WBPaper00038491 | |||||
| WBPaper00048761 | ||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
| Method | Gene |
