WormBase Tree Display for Gene: WBGene00012144

WBGene00012144 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 2
    Name: CGC_name: lgmn-1 Person_evidence: WBPerson56
          Author_evidence: H. Kadota
      Sequence_name: T28H10.3
      Molecular_name: T28H10.3
        T28H10.3.1
        CE14367
      Other_name: CELE_T28H10.3 Accession_evidence: NDB BX284605
      Public_name: lgmn-1
    DB_info: Database: AceView gene 5M993
        WormQTL gene WBGene00012144
        WormFlux gene WBGene00012144
        NDB locus_tag CELE_T28H10.3
        Panther gene CAEEL|WormBase=WBGene00012144|UniProtKB=G5EBF4
          family PTHR12000
        NCBI gene 179714
        RefSeq protein NM_073736.7
        KEGG KEGG_id 3.4.22.34
        NemaPath KEGG_id 3.4.22.34
        TREEFAM TREEFAM_ID TF313403
        TrEMBL UniProtAcc G5EBF4
        UniProt_GCRP UniProtAcc G5EBF4
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 11 Mar 2021 09:37:10 WBPerson1983 Name_change: CGC_name: lgmn-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgmn
    Allele (39)
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (37)
    Paralog: WBGene00011482 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable cysteine-type endopeptidase activity. Involved in PERK-mediated unfolded protein response. Predicted to be located in vacuole. Is an ortholog of human LGMN (legumain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28H10.3
    Corresponding_transcript: T28H10.3.1
    Other_sequence: DN190327.1
      TCC00104_1
      OF00052
      AS10429
      AAC00140_1
      AIC00047_1
      DN191367.1
      Oden_isotig14210
      ES567090.1
      AM744819.1
      Dviv_isotig11444
      HGC03168_1
      Dviv_isotig04972
      MP01311
      FE915354.1
      PP00400
      NB07886
      AAC00521_1
      MPC00276_1
      Oden_isotig08454
      BXC00202_1
      HCC12665_1
      GO249562.1
      NB07965
      JI481932.1
      Oden_isotig17726
      JI171802.1
      FD514120.1
      Dviv_isotig11446
      Acan_isotig09243
      ES565667.1
      EH005493.1
      Tcir_isotig14157
      DN190308.1
      Dviv_isotig04975
      TDC01404_1
      JI173140.1
      TSC00617_1
      HS01212
      XI05224
      GO249193.1
      BG354887.1
      HG11017
      CD203092.1
      AM744568.1
      PVC02183_1
      NAC02081_1
      NBC06758_1
      CJC17504_1
      NBC00311_1
      HCC00265_1
      AAC00700_1
      HG03340
      EX828264.1
      BXC00602_1
      HC06400
      NBC00198_1
      Oden_isotig08453
      OOC03168_1
      AM744260.1
      ES569464.1
      TDC02859_1
      CB037534.1
      EV850164.1
      DVC00807_1
      NB11885
      EX502043.1
      Dviv_isotig21573
      Dviv_isotig04974
      EL890469.1
      BMC18764_1
      ES570175.1
      FE912879.1
      DN190824.1
      BM01482
      MI00704
      BMC10340_1
      EX564556.1
      ASC02177_1
      Oden_isotig08455
      BXC03060_1
      HQ110101.1
      HGC08285_1
      CD202988.1
      EH005476.1
      TSC07370_1
      Oden_isotig20688
      GE637894.1
      ASC34762_1
      HC02128
      PT02838
      HSC01054_1
      Dviv_isotig11445
      FE915383.1
      TDC02367_1
      Hbac_isotig06486
      TDC02408_1
      PTC02733_1
      JI169346.1
      Oden_isotig14211
      AM744661.1
      HC02291
      JG463647.1
      Dviv_isotig21572
      AM177177.1
      ACC00251_1
      PPC01380_1
      MIC00087_1
      Oden_isotig27693
      CSC01362_1
      TX00724
      Oden_isotig25894
      DVC00453_1
      Dviv_isotig04973
      BU088172.1
      Oden_isotig20413
      DN191118.1
      AM744844.1
      HG05142
      BUC02228_1
      LSC01334_1
      DN190265.1
      DN191059.1
      MC04698
      OOC02196_1
      XIC02039_1
      DN191206.1
      ASC31381_1
      JI479650.1
      LSC01258_1
      Dviv_isotig11447
      MCC05503_1
      DN191098.1
      AAC00060_1
      ACC02672_1
      FE916783.1
      EX500771.1
      CR05908
      JI474911.1
    Associated_feature: WBsf647381
      WBsf661908
      WBsf232663
  Experimental_info: RNAi_result: WBRNAi00076725 Inferred_automatically: RNAi_primary
      WBRNAi00054448 Inferred_automatically: RNAi_primary
      WBRNAi00089172 Inferred_automatically: RNAi_primary
      WBRNAi00001579 Inferred_automatically: RNAi_primary
      WBRNAi00036107 Inferred_automatically: RNAi_primary
      WBRNAi00019417 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10444
      Expr10445
      Expr1010916
      Expr1035372
      Expr1157992
      Expr2006638
      Expr2024855
    Drives_construct: WBCnstr00015333
      WBCnstr00030108
    Construct_product: WBCnstr00022837
      WBCnstr00030108
    Microarray_results (23)
    Expression_cluster (345)
    Interaction (162)
  Map_info: Map: V Position: 4.43767
    Positive: Positive_clone: T28H10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059755
    WBPaper00062690
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene