WormBase Tree Display for Gene: WBGene00012182

WBGene00012182 SMap: S_parent: Sequence: W01D2
  Identity: Version: 2
    Name: CGC_name: osta-3 Person_evidence: WBPerson7115
            WBPerson573
      Sequence_name: W01D2.5
      Molecular_name: W01D2.5a
        W01D2.5a.1
        CE20128
        W01D2.5b
        CE48560
        W01D2.5a.2
        W01D2.5b.1
      Other_name: CELE_W01D2.5 Accession_evidence: NDB BX284602
      Public_name: osta-3
    DB_info: Database: AceView gene 2P99
        WormQTL gene WBGene00012182
        WormFlux gene WBGene00012182
        NDB locus_tag CELE_W01D2.5
        Panther gene CAEEL|WormBase=WBGene00012182|UniProtKB=Q9XU63
          family PTHR23423
        NCBI gene 175140
        RefSeq protein NM_064670.6
            NM_001306651.3
        SwissProt UniProtAcc Q9XU63
        TrEMBL UniProtAcc U4PEW3
        UniProt_GCRP UniProtAcc Q9XU63
        OMIM gene 612084
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 29 Jun 2012 17:03:10 WBPerson2970 Name_change: CGC_name: osta-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: osta
    Allele (46)
    RNASeq_FPKM (74)
    GO_annotation: 00101511
      00101512
      00101513
      00101514
      00101515
      00105071
    Ortholog: WBGene00161120 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00163555 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00026955 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00129895 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00062198 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00226368 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7765 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6222 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16826 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8070 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20023 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27347 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4946 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21462 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g24021 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g4504 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23633 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00121.g4939 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-osta-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18327 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03141.g29202 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_10949 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004623 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08777 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12329 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20159110 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6617 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246696 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00267369 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0036834 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-040912-10 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-110411-70 Danio rerio From_analysis: Inparanoid
            OrthoFinder
            Panther
      HGNC:29955 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      MGI:2146634 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
      RGD:1311100 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
    Paralog: WBGene00009574 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015942 Caenorhabditis elegans From_analysis: Panther
      WBGene00015287 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in membrane. Expressed in ciliated neurons. Human ortholog(s) of this gene implicated in progressive familial intrahepatic cholestasis. Is an ortholog of human SLC51A (solute carrier family 51 member A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070221 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:29955)
  Molecular_info: Corresponding_CDS: W01D2.5a
      W01D2.5b
    Corresponding_transcript: W01D2.5a.1
      W01D2.5a.2
      W01D2.5b.1
    Other_sequence (24)
    Associated_feature: WBsf654928
      WBsf990822
      WBsf990823
      WBsf990824
      WBsf990825
      WBsf1013907
      WBsf1013908
      WBsf222511
  Experimental_info: RNAi_result: WBRNAi00054527 Inferred_automatically: RNAi_primary
      WBRNAi00019468 Inferred_automatically: RNAi_primary
      WBRNAi00036150 Inferred_automatically: RNAi_primary
      WBRNAi00062392 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11187
      Expr1016714
      Expr1035386
      Expr1158072
      Expr2014653
      Expr2032886
    Drives_construct: WBCnstr00017767
      WBCnstr00030080
    Construct_product: WBCnstr00030080
    Microarray_results (21)
    Expression_cluster (153)
    Interaction: WBInteraction000285895
      WBInteraction000452512
      WBInteraction000544146
  Map_info: Map: II Position: 23.5298
    Positive: Positive_clone: W01D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00063946
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene