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WormBase Tree Display for Gene: WBGene00008548

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Name Class

WBGene00008548SMapS_parentSequenceF07A11
IdentityVersion1
NameSequence_nameF07A11.5
Molecular_nameF07A11.5
F07A11.5.1
CE46255
Other_nameCELE_F07A11.5Accession_evidenceNDBBX284602
Public_nameF07A11.5
DB_infoDatabaseAceViewgene2L903
WormQTLgeneWBGene00008548
WormFluxgeneWBGene00008548
NDBlocus_tagCELE_F07A11.5
PanthergeneCAEEL|WormBase=WBGene00008548|UniProtKB=Q19133
familyPTHR10584
NCBIgene174781
RefSeqproteinNM_064082.6
KEGGKEGG_id2.7.1.15
NemaPathKEGG_id2.7.1.15
TREEFAMTREEFAM_IDTF105770
TrEMBLUniProtAccQ19133
UniProt_GCRPUniProtAccQ19133
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (37)
RNASeq_FPKM (74)
GO_annotation (25)
OrthologWBGene00025817Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00053609Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00139811Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122209Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00110740Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00162742Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00269350Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12476Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7205Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12939Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5671Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12365Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27214Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17273Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9728Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g6666Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17841Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00456.g11053Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00456.g11068Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-F07A11.5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold60.g389Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00217.g7267Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14142Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23619Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005302Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02375Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11925Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20325500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5996Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248232Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00255793Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00255794Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285027Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000632Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0025640Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0032424Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040625-112Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:30325Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1918586Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1310064Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00011128Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013720Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020765Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; metal ion binding activity; and ribokinase activity. Predicted to be involved in D-ribose catabolic process and carbohydrate phosphorylation. Predicted to be located in cytosol. Is an ortholog of human RBKS (ribokinase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF07A11.5
Corresponding_CDS_historyF07A11.5:wp227
Corresponding_transcriptF07A11.5.1
Other_sequenceHGC00757_1
AS03467
ASC34428_1
ACC11631_1
ES880549.1
FC540360.1
ASC04356_1
Name_isotig04742
Oden_isotig03490
HG11592
FC542966.1
FE916699.1
ES565628.1
DN153337.1
ACC27314_1
Oden_isotig03488
JI174023.1
Oden_contig06048
FE910914.1
TSC07385_1
ES565318.1
ES273521.1
Dviv_isotig31943
ES567168.1
ASC10802_1
ASC17863_1
Oden_isotig03491
TLC00170_1
JO468285.1
OOC00466_1
Oden_contig06047
Acan_isotig14685
BQ381427.1
AS13907
HS00826
HBC21331_1
AS02329
JI168075.1
FE914103.1
ES413392.1
CJC02298_1
HBC26402_1
TSC07194_1
FE913523.1
Oden_isotig03489
JI175142.1
FG619053.1
JO470631.1
Oden_isotig27580
BMC06394_1
Associated_featureWBsf989818
WBsf989819
WBsf1013272
WBsf222169
WBsf222170
Experimental_infoRNAi_resultWBRNAi00012799Inferred_automaticallyRNAi_primary
WBRNAi00043844Inferred_automaticallyRNAi_primary
Expr_patternExpr1028453
Expr1147821
Expr2002234
Expr2020455
Drives_constructWBCnstr00032880
Construct_productWBCnstr00032880
Microarray_results (19)
Expression_cluster (176)
Interaction (85)
Map_infoPositivePositive_cloneF07A11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII3.79041
ReferenceWBPaper00038491
WBPaper00055090
MethodGene