WormBase Tree Display for Gene: WBGene00012144

WBGene00012144 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 2
    Name: CGC_name: lgmn-1 Person_evidence: WBPerson56
          Author_evidence: H. Kadota
      Sequence_name: T28H10.3
      Molecular_name: T28H10.3
        T28H10.3.1
        CE14367
      Other_name: CELE_T28H10.3 Accession_evidence: NDB BX284605
      Public_name: lgmn-1
    DB_info: Database: AceView gene 5M993
        WormQTL gene WBGene00012144
        WormFlux gene WBGene00012144
        NDB locus_tag CELE_T28H10.3
        Panther gene CAEEL|WormBase=WBGene00012144|UniProtKB=G5EBF4
          family PTHR12000
        NCBI gene 179714
        RefSeq protein NM_073736.7
        KEGG KEGG_id 3.4.22.34
        NemaPath KEGG_id 3.4.22.34
        TREEFAM TREEFAM_ID TF313403
        TrEMBL UniProtAcc G5EBF4
        UniProt_GCRP UniProtAcc G5EBF4
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 11 Mar 2021 09:37:10 WBPerson1983 Name_change: CGC_name: lgmn-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgmn
    Allele (39)
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (37)
    Paralog: WBGene00011482 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable cysteine-type endopeptidase activity. Involved in PERK-mediated unfolded protein response. Predicted to be located in vacuole. Is an ortholog of human LGMN (legumain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28H10.3
    Corresponding_transcript: T28H10.3.1
    Other_sequence (139)
    Associated_feature: WBsf647381
      WBsf661908
      WBsf232663
  Experimental_info: RNAi_result: WBRNAi00076725 Inferred_automatically: RNAi_primary
      WBRNAi00054448 Inferred_automatically: RNAi_primary
      WBRNAi00089172 Inferred_automatically: RNAi_primary
      WBRNAi00001579 Inferred_automatically: RNAi_primary
      WBRNAi00036107 Inferred_automatically: RNAi_primary
      WBRNAi00019417 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10444
      Expr10445
      Expr1010916
      Expr1035372
      Expr1157992
      Expr2006638
      Expr2024855
    Drives_construct: WBCnstr00015333
      WBCnstr00030108
    Construct_product: WBCnstr00022837
      WBCnstr00030108
    Microarray_results (23)
    Expression_cluster (345)
    Interaction: WBInteraction000113516
      WBInteraction000118590
      WBInteraction000120159
      WBInteraction000120567
      WBInteraction000125903
      WBInteraction000134235
      WBInteraction000137236
      WBInteraction000140552
      WBInteraction000141381
      WBInteraction000157163
      WBInteraction000161939
      WBInteraction000167903
      WBInteraction000168106
      WBInteraction000171890
      WBInteraction000181453
      WBInteraction000183775
      WBInteraction000184585
      WBInteraction000185128
      WBInteraction000187745
      WBInteraction000189327
      WBInteraction000191367
      WBInteraction000194324
      WBInteraction000194819
      WBInteraction000195154
      WBInteraction000196527
      WBInteraction000198700
      WBInteraction000199119
      WBInteraction000201942
      WBInteraction000203108
      WBInteraction000205309
      WBInteraction000206970
      WBInteraction000207284
      WBInteraction000208285
      WBInteraction000209632
      WBInteraction000210813
      WBInteraction000211284
      WBInteraction000217625
      WBInteraction000219708
      WBInteraction000220691
      WBInteraction000220819
      WBInteraction000220961
      WBInteraction000222137
      WBInteraction000222765
      WBInteraction000225821
      WBInteraction000227984
      WBInteraction000230741
      WBInteraction000235466
      WBInteraction000239317
      WBInteraction000246545
      WBInteraction000247874
      WBInteraction000248733
      WBInteraction000249596
      WBInteraction000250366
      WBInteraction000252819
      WBInteraction000254652
      WBInteraction000256273
      WBInteraction000257973
      WBInteraction000259577
      WBInteraction000259638
      WBInteraction000261508
      WBInteraction000262008
      WBInteraction000262565
      WBInteraction000265361
      WBInteraction000267405
      WBInteraction000270591
      WBInteraction000270675
      WBInteraction000272078
      WBInteraction000272778
      WBInteraction000273170
      WBInteraction000282183
      WBInteraction000283180
      WBInteraction000286246
      WBInteraction000288766
      WBInteraction000288835
      WBInteraction000289782
      WBInteraction000291700
      WBInteraction000292584
      WBInteraction000292593
      WBInteraction000293628
      WBInteraction000295568
      WBInteraction000298998
      WBInteraction000301131
      WBInteraction000303907
      WBInteraction000304504
      WBInteraction000306809
      WBInteraction000310621
      WBInteraction000312385
      WBInteraction000313535
      WBInteraction000318410
      WBInteraction000320061
      WBInteraction000321435
      WBInteraction000322908
      WBInteraction000324183
      WBInteraction000325060
      WBInteraction000326941
      WBInteraction000327989
      WBInteraction000329660
      WBInteraction000330506
      WBInteraction000331114
      WBInteraction000331389
      WBInteraction000335631
      WBInteraction000336477
      WBInteraction000346007
      WBInteraction000347629
      WBInteraction000354162
      WBInteraction000354680
      WBInteraction000355119
      WBInteraction000356586
      WBInteraction000357806
      WBInteraction000360081
      WBInteraction000361586
      WBInteraction000361862
      WBInteraction000367295
      WBInteraction000369240
      WBInteraction000369347
      WBInteraction000370325
      WBInteraction000371476
      WBInteraction000372276
      WBInteraction000372557
      WBInteraction000376497
      WBInteraction000379364
      WBInteraction000379683
      WBInteraction000380327
      WBInteraction000387150
      WBInteraction000388825
      WBInteraction000389347
      WBInteraction000390078
      WBInteraction000392814
      WBInteraction000395568
      WBInteraction000399921
      WBInteraction000402215
      WBInteraction000409585
      WBInteraction000409903
      WBInteraction000409982
      WBInteraction000410819
      WBInteraction000414066
      WBInteraction000418457
      WBInteraction000419424
      WBInteraction000422277
      WBInteraction000423805
      WBInteraction000426344
      WBInteraction000427318
      WBInteraction000433940
      WBInteraction000434214
      WBInteraction000435109
      WBInteraction000437173
      WBInteraction000446621
      WBInteraction000451140
      WBInteraction000451189
      WBInteraction000452435
      WBInteraction000452658
      WBInteraction000453709
      WBInteraction000454242
      WBInteraction000460081
      WBInteraction000461282
      WBInteraction000551744
      WBInteraction000571607
      WBInteraction000573734
      WBInteraction000575272
      WBInteraction000579725
      WBInteraction000580800
      WBInteraction000586161
  Map_info: Map: V Position: 4.43767
    Positive: Positive_clone: T28H10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059755
    WBPaper00062690
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene