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WormBase Tree Display for Gene: WBGene00006870

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Name Class

WBGene00006870SMapS_parentSequenceF14F3
IdentityVersion2
NameCGC_namevab-3Person_evidenceWBPerson77
Sequence_nameF14F3.1
Molecular_nameF14F3.1a
F14F3.1a.1
CE24899
F14F3.1b
CE28216
F14F3.1c
CE28217
F14F3.1a.2
F14F3.1b.1
F14F3.1c.1
Other_namelin-20
mab-18CGC_data_submission
pax-6
sax-4Paper_evidenceWBPaper00003665
CELE_F14F3.1Accession_evidenceNDBBX284606
Public_namevab-3
DB_infoDatabaseAceViewgeneXL137
WormQTLgeneWBGene00006870
WormFluxgeneWBGene00006870
OMIMdisease120200
120430
136520
148190
165550
206700
604219
60422
gene607108
NDBlocus_tagCELE_F14F3.1
PanthergeneCAEEL|WormBase=WBGene00006870|UniProtKB=G5EDS1
familyPTHR45636
NCBIgene181251
RefSeqproteinNM_001029401.6
NM_001029399.4
NM_001029400.4
SwissProtUniProtAccG5EDS1
TREEFAMTREEFAM_IDTF320146
UniProt_GCRPUniProtAccG5EDS1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
208 Oct 2013 00:00:00WBPerson2970Name_changeOther_namesax-4
StatusLive
Gene_info (12)
Disease_infoPotential_model (14)
Disease_relevanceThe human ortholog, PAX6 (Paired box gene 6), is mutated in several developmental disorders that include disorders of eye development, like Aniridia, Coloboma, Gillespie syndrome, Keratitis, Peters anamaly and Optic nerve hypoplasia; PAX6 proteins are highly conserved, contain a paired domain (PD) and the homeodomain (HD), which are DNA binding domains and are involved in brain and eye development in many species as regulators of transcription; in C. elegans, the pax-6 gene encodes several isoforms, mutant studies of which, indicate that paired-domain (PD) containing isoforms are involved in epidermal morphogenesis, epidermal cell fates, and gonad cell migration; mutations in non-PD isoforms affect the fate of sensory structures in the mail tale; further, PAX-6 isoforms can have an additive, synergistic or antagonistic interaction depending on cellular context.Homo sapiensPaper_evidenceWBPaper00024640
Accession_evidenceOMIM604219
120430
120200
136520
206700
148190
165550
60422
Curator_confirmedWBPerson324
Date_last_updated02 May 2012 00:00:00
Molecular_infoCorresponding_CDSF14F3.1a
F14F3.1b
F14F3.1c
Corresponding_CDS_historyF14F3.1:wp47
Corresponding_transcriptF14F3.1a.1
F14F3.1a.2
F14F3.1b.1
F14F3.1c.1
Other_sequence (24)
Associated_feature (38)
Gene_product_bindsWBsf027927
WBsf977965
Transcription_factorWBTranscriptionFactor000105
Experimental_infoRNAi_result (19)
Expr_pattern (21)
Drives_construct (16)
Construct_productWBCnstr00000175
WBCnstr00000176
WBCnstr00018671
WBCnstr00018672
WBCnstr00018673
WBCnstr00034118
AntibodyWBAntibody00000202
WBAntibody00000203
WBAntibody00001432
Microarray_results (38)
Expression_cluster (178)
InteractionWBInteraction000000248
WBInteraction000000902
WBInteraction000000903
WBInteraction000000904
WBInteraction000003443
WBInteraction000003895
WBInteraction000004053
WBInteraction000005446
WBInteraction000005850
WBInteraction000008524
WBInteraction000008525
WBInteraction000008526
WBInteraction000008527
WBInteraction000008528
WBInteraction000008529
WBInteraction000008530
WBInteraction000009277
WBInteraction000009410
WBInteraction000009672
WBInteraction000009923
WBInteraction000028316
WBInteraction000028448
WBInteraction000028495
WBInteraction000028891
WBInteraction000028970
WBInteraction000029190
WBInteraction000029249
WBInteraction000029256
WBInteraction000029409
WBInteraction000029534
WBInteraction000029572
WBInteraction000029639
WBInteraction000029655
WBInteraction000029656
WBInteraction000029657
WBInteraction000029658
WBInteraction000029659
WBInteraction000029696
WBInteraction000029705
WBInteraction000029735
WBInteraction000029791
WBInteraction000029794
WBInteraction000030004
WBInteraction000030770
WBInteraction000031405
WBInteraction000031450
WBInteraction000031774
WBInteraction000031828
WBInteraction000031830
WBInteraction000031913
WBInteraction000031914
WBInteraction000031915
WBInteraction000031916
WBInteraction000031917
WBInteraction000031918
WBInteraction000031919
WBInteraction000031920
WBInteraction000031921
WBInteraction000031922
WBInteraction000031923
WBInteraction000031924
WBInteraction000031925
WBInteraction000032548
WBInteraction000032549
WBInteraction000032550
WBInteraction000032601
WBInteraction000032602
WBInteraction000032801
WBInteraction000032960
WBInteraction000033421
WBInteraction000033422
WBInteraction000034091
WBInteraction000034313
WBInteraction000034592
WBInteraction000034715
WBInteraction000035128
WBInteraction000035143
WBInteraction000035181
WBInteraction000035673
WBInteraction000035887
WBInteraction000035914
WBInteraction000036529
WBInteraction000036834
WBInteraction000038315
WBInteraction000038836
WBInteraction000039903
WBInteraction000040381
WBInteraction000040801
WBInteraction000041363
WBInteraction000041529
WBInteraction000041530
WBInteraction000041662
WBInteraction000043332
WBInteraction000043491
WBInteraction000043493
WBInteraction000043517
WBInteraction000043563
WBInteraction000043932
WBInteraction000043933
WBInteraction000044853
WBInteraction000046063
WBInteraction000046386
WBInteraction000046402
WBInteraction000046928
WBInteraction000047016
WBInteraction000047298
WBInteraction000047438
WBInteraction000048517
WBInteraction000048573
WBInteraction000049411
WBInteraction000050451
WBInteraction000052046
WBInteraction000114756
WBInteraction000117528
WBInteraction000117529
WBInteraction000119387
WBInteraction000122974
WBInteraction000127602
WBInteraction000140910
WBInteraction000140911
WBInteraction000147245
WBInteraction000147246
WBInteraction000153203
WBInteraction000159812
WBInteraction000161852
WBInteraction000162565
WBInteraction000164453
WBInteraction000165498
WBInteraction000165733
WBInteraction000166451
WBInteraction000172959
WBInteraction000174025
WBInteraction000183707
WBInteraction000184930
WBInteraction000190793
WBInteraction000195347
WBInteraction000196915
WBInteraction000208097
WBInteraction000213278
WBInteraction000215698
WBInteraction000218513
WBInteraction000222896
WBInteraction000229491
WBInteraction000231123
WBInteraction000231584
WBInteraction000240102
WBInteraction000252045
WBInteraction000256775
WBInteraction000258384
WBInteraction000263927
WBInteraction000269184
WBInteraction000274483
WBInteraction000281943
WBInteraction000283215
WBInteraction000283419
WBInteraction000286206
WBInteraction000286924
WBInteraction000298438
WBInteraction000300741
WBInteraction000302150
WBInteraction000306427
WBInteraction000306858
WBInteraction000307164
WBInteraction000312289
WBInteraction000321667
WBInteraction000322115
WBInteraction000332284
WBInteraction000336075
WBInteraction000336173
WBInteraction000353385
WBInteraction000365522
WBInteraction000374865
WBInteraction000381958
WBInteraction000384361
WBInteraction000384362
WBInteraction000384363
WBInteraction000384364
WBInteraction000384365
WBInteraction000384366
WBInteraction000384367
WBInteraction000384368
WBInteraction000384369
WBInteraction000384370
WBInteraction000384371
WBInteraction000384419
WBInteraction000384433
WBInteraction000384589
WBInteraction000384612
WBInteraction000384627
WBInteraction000385296
WBInteraction000402081
WBInteraction000410304
WBInteraction000420539
WBInteraction000440130
WBInteraction000441060
WBInteraction000454215
WBInteraction000454819
WBInteraction000457256
WBInteraction000501427
WBInteraction000501587
WBInteraction000501589
WBInteraction000502063
WBInteraction000502065
WBInteraction000502967
WBInteraction000502968
WBInteraction000503514
WBInteraction000503515
WBInteraction000503516
WBInteraction000503517
WBInteraction000503518
WBInteraction000503671
WBInteraction000503673
WBInteraction000507406
WBInteraction000507407
WBInteraction000507408
WBInteraction000507409
WBInteraction000507410
WBInteraction000507411
WBInteraction000507412
WBInteraction000507413
WBInteraction000507414
WBInteraction000507415
WBInteraction000507416
WBInteraction000507417
WBInteraction000507418
WBInteraction000509730
WBInteraction000509731
WBInteraction000509732
WBInteraction000509733
WBInteraction000509734
WBInteraction000509735
WBInteraction000509736
WBInteraction000509737
WBInteraction000509738
WBInteraction000509739
WBInteraction000509740
WBInteraction000509741
WBInteraction000509742
WBInteraction000509743
WBInteraction000509744
WBInteraction000509745
WBInteraction000509746
WBInteraction000509747
WBInteraction000509748
WBInteraction000509749
WBInteraction000509750
WBInteraction000509751
WBInteraction000509752
WBInteraction000509753
WBInteraction000509754
WBInteraction000509755
WBInteraction000509756
WBInteraction000509757
WBInteraction000509758
WBInteraction000509759
WBInteraction000509760
WBInteraction000514031
WBInteraction000514032
WBInteraction000514033
WBInteraction000514034
WBInteraction000516146
WBInteraction000516147
WBInteraction000516148
WBInteraction000516149
WBInteraction000516151
WBInteraction000516152
WBInteraction000516153
WBInteraction000516154
WBInteraction000516155
WBInteraction000516156
WBInteraction000516158
WBInteraction000516159
WBInteraction000516160
WBInteraction000516161
WBInteraction000516162
WBInteraction000516163
WBInteraction000516164
WBInteraction000516165
WBInteraction000516166
WBInteraction000516167
WBInteraction000516168
WBInteraction000516169
WBInteraction000516171
WBInteraction000516172
WBInteraction000516173
WBInteraction000521866
WBInteraction000521867
WBInteraction000523238
WBInteraction000523651
WBInteraction000523662
WBInteraction000523668
WBInteraction000523678
WBInteraction000523693
WBInteraction000523747
WBInteraction000525019
WBInteraction000525439
WBInteraction000525480
WBInteraction000525503
WBInteraction000525594
WBInteraction000525603
WBInteraction000525621
WBInteraction000525655
WBInteraction000525713
WBInteraction000525915
WBInteraction000526044
WBInteraction000526221
WBInteraction000526344
WBInteraction000526411
WBInteraction000526568
WBInteraction000526646
WBInteraction000526668
WBInteraction000526669
WBInteraction000526712
WBInteraction000526720
WBInteraction000526995
WBInteraction000527046
WBInteraction000527112
WBInteraction000527207
WBInteraction000527322
WBInteraction000527337
WBInteraction000527354
WBInteraction000527361
WBInteraction000527382
WBInteraction000527484
WBInteraction000527509
WBInteraction000527518
WBInteraction000527586
WBInteraction000527637
WBInteraction000527646
WBInteraction000527745
WBInteraction000528061
WBInteraction000528140
WBInteraction000528235
WBInteraction000528301
WBInteraction000528336
WBInteraction000528460
WBInteraction000528486
WBInteraction000528502
WBInteraction000528542
WBInteraction000528562
WBInteraction000528572
WBInteraction000528735
WBInteraction000528861
WBInteraction000528922
WBInteraction000528949
WBInteraction000528979
WBInteraction000529009
WBInteraction000529048
WBInteraction000529151
WBInteraction000529203
WBInteraction000529250
WBInteraction000529298
WBInteraction000529340
WBInteraction000529428
WBInteraction000529619
WBInteraction000529635
WBInteraction000529673
WBInteraction000529680
WBInteraction000529709
WBInteraction000529797
WBInteraction000529869
WBInteraction000529894
WBInteraction000530076
WBInteraction000530108
WBInteraction000530166
WBInteraction000530247
WBInteraction000530287
WBInteraction000530303
WBInteraction000530333
WBInteraction000530417
WBInteraction000530458
WBInteraction000530486
WBInteraction000530545
WBInteraction000530582
WBInteraction000530661
WBInteraction000530705
WBInteraction000530781
WBInteraction000530832
WBInteraction000530899
WBInteraction000530935
WBInteraction000530985
WBInteraction000531007
WBInteraction000531065
WBInteraction000531088
WBInteraction000531162
WBInteraction000531293
WBInteraction000531339
WBInteraction000531350
WBInteraction000531373
WBInteraction000531405
WBInteraction000531450
WBInteraction000531588
WBInteraction000531609
WBInteraction000531618
WBInteraction000531660
WBInteraction000531686
WBInteraction000531708
WBInteraction000531772
WBInteraction000531889
WBInteraction000531935
WBInteraction000532037
WBInteraction000532087
WBInteraction000532121
WBInteraction000532181
WBInteraction000532211
WBInteraction000532224
WBInteraction000532226
WBInteraction000532238
WBInteraction000532255
WBInteraction000532330
WBInteraction000532403
WBInteraction000532468
WBInteraction000532558
WBInteraction000532580
WBInteraction000532655
WBInteraction000532693
WBInteraction000532748
WBInteraction000532791
WBInteraction000532832
WBInteraction000532856
WBInteraction000533018
WBInteraction000533127
WBInteraction000533150
WBInteraction000533169
WBInteraction000533220
WBInteraction000533289
WBInteraction000533401
WBInteraction000533427
WBInteraction000533451
WBInteraction000533471
WBInteraction000533479
WBInteraction000533511
WBInteraction000533631
WBInteraction000533670
WBInteraction000533682
WBInteraction000533693
WBInteraction000533709
WBInteraction000533733
WBInteraction000533751
WBInteraction000533785
WBInteraction000533845
WBInteraction000533966
WBInteraction000533984
WBInteraction000533995
WBInteraction000534142
WBInteraction000534203
WBInteraction000534245
WBInteraction000534514
WBInteraction000534653
WBInteraction000535083
WBInteraction000535108
WBInteraction000535369
WBInteraction000543673
WBInteraction000547768
WBInteraction000547770
WBInteraction000547773
WBInteraction000548967
WBInteraction000563450
Anatomy_functionWBbtf0613
Map_infoMapXPosition2.22417Error0.001647
Well_ordered
PositivePositive_cloneC33D3
C56D7
CB11
F14F3Inferred_automaticallyFrom sequence, transcript, pseudogene data
M4B
NegativeNegative_cloneAF4
C12H7
C29G11
C39B10
K08A5
ZC504
Mapping_data2_point (12)
Multi_point (26)
Pos_neg_data (14)
Landmark_gene
Reference (127)
Remarkvab-3 only corresponds to F14F3.1a whereas mab-18 corresponds to the splice variants F14F3.1b and F14F3.1c
mab-18 corresponds only to F14F3.1b and F14F3.1c. The first splice variant (F14F3.1a) corresponds to the vab-3 gene.
MethodGene