WormBase Tree Display for Gene: WBGene00012111
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WBGene00012111 | SMap | S_parent | Sequence | T28A8 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | Sequence_name | T28A8.5 | |||||
Molecular_name | T28A8.5a | ||||||
T28A8.5a.1 | |||||||
CE44302 | |||||||
T28A8.5b | |||||||
CE54374 | |||||||
T28A8.5b.1 | |||||||
Other_name | CELE_T28A8.5 | Accession_evidence | NDB | BX284603 | |||
Public_name | T28A8.5 | ||||||
DB_info | Database | AceView | gene | 3O591 | |||
WormQTL | gene | WBGene00012111 | |||||
WormFlux | gene | WBGene00012111 | |||||
NDB | locus_tag | CELE_T28A8.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00012111|UniProtKB=Q9XU08 | |||||
family | PTHR23362 | ||||||
NCBI | gene | 189008 | |||||
RefSeq | protein | NM_001395777.1 | |||||
NM_067392.6 | |||||||
TrEMBL | UniProtAcc | Q9XU08 | |||||
A0A8D9I8M7 | |||||||
UniProt_GCRP | UniProtAcc | Q9XU08 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Allele (15) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP3804 | ||||||
Ortholog (18) | |||||||
Paralog (37) | |||||||
Structured_description | Automated_description | Enriched in OLL; PVD; germ line; and germline precursor cell based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; hsf-1; and sir-2.1 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including rotenone; manganese chloride; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SPK domain and Domain of unknown function (DUF545). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T28A8.5a | |||||
T28A8.5b | |||||||
Corresponding_CDS_history | T28A8.5:wp209 | ||||||
Corresponding_transcript | T28A8.5a.1 | ||||||
T28A8.5b.1 | |||||||
Associated_feature | WBsf994908 | ||||||
WBsf226030 | |||||||
Experimental_info | RNAi_result | WBRNAi00019375 | Inferred_automatically | RNAi_primary | |||
WBRNAi00082455 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006240 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054374 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00082650 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1025680 | ||||||
Expr1035351 | |||||||
Expr1157921 | |||||||
Expr2006593 | |||||||
Expr2024810 | |||||||
Microarray_results | SMD_T28A8.5 | ||||||
179004_at | |||||||
Aff_T28A8.5 | |||||||
GPL19516_CGZ0037373 | |||||||
GPL21109_T28A8.5 | |||||||
GPL3518_CE18976 | |||||||
GPL8673_T28A8_5P00054 | |||||||
GPL8673_T28A8_5P00325 | |||||||
Expression_cluster (117) | |||||||
SAGE_tag | SAGE:atggacaggt | Strand | Sense | ||||
Unambiguously_mapped | |||||||
SAGE:atggacaggtgaagctc | Strand | Sense | |||||
Unambiguously_mapped | |||||||
Interaction (38) | |||||||
Map_info | Positive | Positive_clone | T28A8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Interpolated_map_position | III | 21.2478 | |||||
Method | Gene |