WormBase Tree Display for Gene: WBGene00002979
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| WBGene00002979 | SMap | S_parent | Sequence | C46H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lfe-2 | Person_evidence | WBPerson625 | |||||
| Sequence_name | C46H11.4 | ||||||||
| Molecular_name (16) | |||||||||
| Other_name | C46H11.g | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C46H11.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | lfe-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lfe | ||||||||
| Allele (148) | |||||||||
| Legacy_information | [Clandinin T] mutations suppress let-23 sterility | ||||||||
| [C.elegansII] sy326 : suppresses sterility of let-23 mutations. [PS] | |||||||||
| Strain | WBStrain00030843 | ||||||||
| WBStrain00030855 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00014081 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00021260 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020631 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009262 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description (2) | |||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14897) | ||||
| Molecular_info | Corresponding_CDS | C46H11.4a | |||||||
| C46H11.4b | |||||||||
| C46H11.4c | |||||||||
| C46H11.4e | |||||||||
| C46H11.4f | |||||||||
| Corresponding_CDS_history | C46H11.4d:wp273 | ||||||||
| C46H11.4f:wp261 | |||||||||
| Corresponding_transcript | C46H11.4a.1 | ||||||||
| C46H11.4b.1 | |||||||||
| C46H11.4c.1 | |||||||||
| C46H11.4e.1 | |||||||||
| C46H11.4f.1 | |||||||||
| C46H11.4f.2 | |||||||||
| Other_sequence (115) | |||||||||
| Associated_feature | WBsf643259 | ||||||||
| WBsf656279 | |||||||||
| WBsf656280 | |||||||||
| WBsf656281 | |||||||||
| WBsf656282 | |||||||||
| WBsf983577 | |||||||||
| WBsf983578 | |||||||||
| WBsf983579 | |||||||||
| WBsf983580 | |||||||||
| WBsf1009756 | |||||||||
| WBsf217614 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003167 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00062776 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027799 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042628 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062771 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007487 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003168 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066573 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003166 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042627 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr505 | ||||||||
| Expr1017641 | |||||||||
| Expr1031379 | |||||||||
| Expr1146612 | |||||||||
| Expr2013089 | |||||||||
| Expr2031321 | |||||||||
| Drives_construct | WBCnstr00012404 | ||||||||
| WBCnstr00036310 | |||||||||
| Construct_product | WBCnstr00036310 | ||||||||
| Microarray_results (47) | |||||||||
| Expression_cluster (149) | |||||||||
| Interaction (55) | |||||||||
| WBProcess | WBbiopr:00000067 | ||||||||
| Map_info | Map | I | Position | -0.423671 | Error | 0.000969 | |||
| Positive | Positive_clone | C46H11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4461 | |||||||
| 4474 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (27) | |||||||||
| Remark | Map I | ||||||||
| lfe-2 was previously attached to C46H11.5 which has since become a splice variant of C46H11.4 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
