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WormBase Tree Display for Gene: WBGene00004216

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Name Class

WBGene00004216EvidenceCGC_data_submission
SMapS_parentSequenceC24B5
IdentityVersion1
NameCGC_nameptr-1Person_evidenceWBPerson349
Sequence_nameC24B5.3
Molecular_nameC24B5.3
C24B5.3.1
CE06861
Other_nameCELE_C24B5.3Accession_evidenceNDBBX284605
Public_nameptr-1
DB_infoDatabaseAceViewgene5J656
WormQTLgeneWBGene00004216
WormFluxgeneWBGene00004216
NDBlocus_tagCELE_C24B5.3
PanthergeneCAEEL|WormBase=WBGene00004216|UniProtKB=Q18129
familyPTHR10796
NCBIgene191746
RefSeqproteinNM_072979.4
TREEFAMTREEFAM_IDTF331806
TrEMBLUniProtAccQ18129
UniProt_GCRPUniProtAccQ18129
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classptr
Allele (44)
StrainWBStrain00047651
RNASeq_FPKM (74)
GO_annotation00060255
00060256
00060257
00060258
00060259
00060260
00060261
00112504
OrthologWBGene00038479Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00157108Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00068639Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00098954Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00123760Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00222597Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1735Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g60Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17259Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4644Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18140Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26162Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g18127Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4101Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10796Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g372Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00018.g1177Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_04127.g18623Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ptr-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold509.g2525Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03036.g28856Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21369Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017156Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10031Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23277Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50240100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15193Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248904Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00264451Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0262867Drosophila melanogasterFrom_analysisOMA
OrthoFinder
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-041210-239Danio rerioFrom_analysisHieranoid
OrthoFinder
OrthoInspector
PhylomeDB
HGNC:24776Homo sapiensFrom_analysisHieranoid
OMA
OrthoFinder
PhylomeDB
MGI:1921925Mus musculusFrom_analysisHieranoid
OrthoFinder
OrthoInspector
PhylomeDB
RGD:1590039Rattus norvegicusFrom_analysisHieranoid
OrthoFinder
OrthoInspector
PhylomeDB
Paralog (30)
Structured_descriptionConcise_descriptionptr-1 encodes an ortholog of Drosophila and human PTCHD3, which definesone of seven paralogous families of sterol sensing domain (SSD)proteins; individually, PTR-1 is weakly required for normal molting fromL4 to adult stages; however, PTR-1, in conjunction with either PTR-16alone or with PTR-6 and PTR-10, is strongly required for both moltingand viability, with double ptr-1/-16 or triple ptr-1/-6/-10 RNAi animalsshowing pronounced molting defects and lethality; PTR-1 is also requiredfor normal adult alae formation, growth to full size, locomotion, andmale tail development.Paper_evidenceWBPaper00006465
WBPaper00024393
WBPaper00026841
WBPaper00027263
WBPaper00028381
Curator_confirmedWBPerson567
Date_last_updated08 Nov 2006 00:00:00
Automated_descriptionInvolved in molting cycle. Acts upstream of or within nematode male tail mating organ morphogenesis. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Is an ortholog of human PTCHD3 (patched domain containing 3 (gene/pseudogene)).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC24B5.3
Corresponding_transcriptC24B5.3.1
Other_sequence (21)
Associated_featureWBsf652893
WBsf652894
WBsf655576
WBsf669200
WBsf669201
WBsf669202
WBsf1000825
WBsf1000826
WBsf1000827
WBsf234194
WBsf234195
WBsf234196
Experimental_infoRNAi_resultWBRNAi00076909Inferred_automaticallyRNAi_primary
WBRNAi00041068Inferred_automaticallyRNAi_primary
WBRNAi00011088Inferred_automaticallyRNAi_primary
WBRNAi00076941Inferred_automaticallyRNAi_primary
WBRNAi00076933Inferred_automaticallyRNAi_primary
WBRNAi00077030Inferred_automaticallyRNAi_primary
WBRNAi00076965Inferred_automaticallyRNAi_primary
WBRNAi00077029Inferred_automaticallyRNAi_primary
Expr_patternExpr1025404
Expr1032073
Expr1145102
Expr2015163
Expr2033401
Drives_constructWBCnstr00035631
Construct_productWBCnstr00035631
Microarray_results (18)
Expression_cluster (209)
Interaction (102)
Map_infoMapVPosition1.94951Error0.000146
PositivePositive_cloneC24B5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004265
WBPaper00005866
WBPaper00026841
WBPaper00033734
WBPaper00038491
WBPaper00055090
WBPaper00064105
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene