WormBase Tree Display for Gene: WBGene00021420
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WBGene00021420 | SMap | S_parent | Sequence | Y38F2AR | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | trap-3 | |||||||
Sequence_name | Y38F2AR.2 | ||||||||
Molecular_name | Y38F2AR.2 | ||||||||
Y38F2AR.2.1 | |||||||||
CE21634 | |||||||||
Other_name | Y38F2A_6126.e | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y38F2AR.2 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | trap-3 | ||||||||
DB_info | Database | AceView | gene | 4D153 | |||||
WormQTL | gene | WBGene00021420 | |||||||
WormFlux | gene | WBGene00021420 | |||||||
NDB | locus_tag | CELE_Y38F2AR.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021420|UniProtKB=Q95XS1 | |||||||
family | PTHR13399 | ||||||||
NCBI | gene | 177028 | |||||||
RefSeq | protein | NM_067797.8 | |||||||
TREEFAM | TREEFAM_ID | TF314998 | |||||||
TrEMBL | UniProtAcc | Q95XS1 | |||||||
UniProt_GCRP | UniProtAcc | Q95XS1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Oct 2007 11:57:48 | WBPerson2970 | Name_change | CGC_name | trap-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | trap | ||||||||
Allele | WBVar01499166 | ||||||||
WBVar01649307 | |||||||||
WBVar01772006 | |||||||||
WBVar01498316 | |||||||||
WBVar01499633 | |||||||||
WBVar01803459 | |||||||||
WBVar00892453 | |||||||||
WBVar00892454 | |||||||||
WBVar00892455 | |||||||||
WBVar00892456 | |||||||||
WBVar00892457 | |||||||||
WBVar00892458 | |||||||||
WBVar00892459 | |||||||||
WBVar00892460 | |||||||||
WBVar00892461 | |||||||||
WBVar00892462 | |||||||||
WBVar00892463 | |||||||||
WBVar00419270 | |||||||||
WBVar01500062 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00089303 | ||||||||
00089304 | |||||||||
00089305 | |||||||||
00089306 | |||||||||
00089307 | |||||||||
00125784 | |||||||||
00125785 | |||||||||
Contained_in_operon | CEOP4684 | ||||||||
Ortholog (36) | |||||||||
Structured_description | Automated_description | Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in endoplasmic reticulum. Is an ortholog of human SSR3 (signal sequence receptor subunit 3). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y38F2AR.2 | |||||||
Corresponding_transcript | Y38F2AR.2.1 | ||||||||
Other_sequence (62) | |||||||||
Associated_feature | WBsf047621 | ||||||||
WBsf645839 | |||||||||
WBsf659985 | |||||||||
WBsf981689 | |||||||||
WBsf995676 | |||||||||
WBsf995677 | |||||||||
WBsf1016895 | |||||||||
WBsf228019 | |||||||||
WBsf228020 | |||||||||
Experimental_info (5) | |||||||||
Map_info | Map | IV | Position | -7.60168 | Error | 0.036956 | |||
Positive | Positive_clone | Y38F2AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00047692 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065356 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |