WormBase Tree Display for Gene: WBGene00016866
expand all nodes | collapse all nodes | view schema
| WBGene00016866 | SMap | S_parent | Sequence | C52B9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | coel-1 | Person_evidence | WBPerson3663 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | C52B9.3 | ||||||||
| Molecular_name | C52B9.3a | ||||||||
| C52B9.3a.1 | |||||||||
| CE04255 | |||||||||
| C52B9.3b | |||||||||
| CE30912 | |||||||||
| C52B9.3b.1 | |||||||||
| Other_name | CELE_C52B9.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | coel-1 | ||||||||
| DB_info | Database | AceView | gene | XE885 | |||||
| WormQTL | gene | WBGene00016866 | |||||||
| WormFlux | gene | WBGene00016866 | |||||||
| NDB | locus_tag | CELE_C52B9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016866|UniProtKB=H2KYZ5 | |||||||
| family | PTHR15140 | ||||||||
| NCBI | gene | 180700 | |||||||
| RefSeq | protein | NM_171947.7 | |||||||
| NM_171665.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF320819 | |||||||
| TrEMBL | UniProtAcc | H2KYZ5 | |||||||
| Q8IFX8 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KYZ5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Feb 2008 16:59:39 | WBPerson2970 | Name_change | CGC_name | coel-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | coel | ||||||||
| Allele | WBVar02125307 | ||||||||
| WBVar00077670 | |||||||||
| WBVar01139415 | |||||||||
| WBVar01139416 | |||||||||
| WBVar00077671 | |||||||||
| WBVar01139417 | |||||||||
| WBVar00077672 | |||||||||
| WBVar01139418 | |||||||||
| WBVar00077673 | |||||||||
| WBVar01139419 | |||||||||
| WBVar01139420 | |||||||||
| WBVar01139421 | |||||||||
| WBVar01549457 | |||||||||
| WBVar01139422 | |||||||||
| WBVar01139423 | |||||||||
| WBVar01139424 | |||||||||
| WBVar01139425 | |||||||||
| WBVar01139426 | |||||||||
| WBVar01139427 | |||||||||
| WBVar01139428 | |||||||||
| WBVar01139429 | |||||||||
| WBVar01139430 | |||||||||
| WBVar01139431 | |||||||||
| WBVar00278407 | |||||||||
| WBVar01814933 | |||||||||
| WBVar01814934 | |||||||||
| WBVar01814935 | |||||||||
| WBVar01710558 | |||||||||
| WBVar01814936 | |||||||||
| WBVar01814937 | |||||||||
| WBVar01814938 | |||||||||
| WBVar01814939 | |||||||||
| WBVar00501012 | |||||||||
| WBVar00501013 | |||||||||
| WBVar00501014 | |||||||||
| WBVar00501015 | |||||||||
| WBVar00501016 | |||||||||
| WBVar00501017 | |||||||||
| WBVar02048773 | |||||||||
| WBVar00501018 | |||||||||
| WBVar00501019 | |||||||||
| WBVar00257120 | |||||||||
| WBVar00501020 | |||||||||
| WBVar00501021 | |||||||||
| WBVar00501022 | |||||||||
| WBVar00501023 | |||||||||
| WBVar00265041 | |||||||||
| WBVar01601512 | |||||||||
| WBVar01601513 | |||||||||
| WBVar00601101 | |||||||||
| WBVar00251075 | |||||||||
| WBVar01980365 | |||||||||
| WBVar02071445 | |||||||||
| WBVar02139166 | |||||||||
| WBVar01499636 | |||||||||
| WBVar01901550 | |||||||||
| WBVar02027015 | |||||||||
| WBVar01468506 | |||||||||
| WBVar02044780 | |||||||||
| WBVar02044781 | |||||||||
| WBVar02044782 | |||||||||
| WBVar02044783 | |||||||||
| WBVar01490296 | |||||||||
| WBVar01139396 | |||||||||
| WBVar01139397 | |||||||||
| WBVar00531867 | |||||||||
| WBVar01486802 | |||||||||
| WBVar01139398 | |||||||||
| WBVar01139399 | |||||||||
| WBVar01486803 | |||||||||
| WBVar01139400 | |||||||||
| WBVar01139401 | |||||||||
| WBVar00531870 | |||||||||
| WBVar01139402 | |||||||||
| WBVar01139403 | |||||||||
| WBVar01139404 | |||||||||
| WBVar01139405 | |||||||||
| WBVar00531875 | |||||||||
| WBVar01139406 | |||||||||
| WBVar01139407 | |||||||||
| WBVar01139408 | |||||||||
| WBVar01139409 | |||||||||
| WBVar01139410 | |||||||||
| WBVar01139411 | |||||||||
| WBVar00077666 | |||||||||
| WBVar00077667 | |||||||||
| WBVar01139412 | |||||||||
| WBVar01139413 | |||||||||
| WBVar00077668 | |||||||||
| WBVar01500067 | |||||||||
| WBVar00077669 | |||||||||
| WBVar01139414 | |||||||||
| Strain | WBStrain00036810 | ||||||||
| WBStrain00037576 | |||||||||
| WBStrain00037594 | |||||||||
| WBStrain00037595 | |||||||||
| WBStrain00037636 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021996 | ||||||||
| 00021997 | |||||||||
| 00021998 | |||||||||
| 00021999 | |||||||||
| 00022000 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00019503 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | coel-1 encodes, by alternative splicing, two isoforms of a putative tubulin-destabilizing protein orthologous to human TBCEL (LRRC35; OMIM:610451), and paralogous to K07H8.1 and human TBCE (OMIM:604934, mutated in HRD); coel-1(tm2136) homozygotes are viable, and COEL-1 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00031580 | |||||
| WBPaper00031581 | |||||||||
| Person_evidence | WBPerson3663 | ||||||||
| WBPerson426 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 12 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoplasm. Expressed in head; tail neurons; and touch receptor neurons. Is an ortholog of human TBCEL (tubulin folding cofactor E like). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C52B9.3a | |||||||
| C52B9.3b | |||||||||
| Corresponding_transcript | C52B9.3a.1 | ||||||||
| C52B9.3b.1 | |||||||||
| Other_sequence (22) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030074 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043013 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012294 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11286 | ||||||||
| Expr11326 | |||||||||
| Expr1022956 | |||||||||
| Expr1037236 | |||||||||
| Expr1146977 | |||||||||
| Expr2010287 | |||||||||
| Expr2028529 | |||||||||
| Drives_construct | WBCnstr00018776 | ||||||||
| WBCnstr00027741 | |||||||||
| Construct_product | WBCnstr00018396 | ||||||||
| WBCnstr00027741 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (214) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | X | Position | -7.822 | Error | 0.007713 | |||
| Positive | Positive_clone | C52B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (7) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
