WormBase Tree Display for Gene: WBGene00011145
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| WBGene00011145 | SMap | S_parent | Sequence | R08D7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | R08D7.5 | |||||||
| Molecular_name | R08D7.5 | ||||||||
| R08D7.5.1 | |||||||||
| CE51740 | |||||||||
| Other_name | CELE_R08D7.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | R08D7.5 | ||||||||
| DB_info | Database | AceView | gene | 3K65 | |||||
| WormQTL | gene | WBGene00011145 | |||||||
| WormFlux | gene | WBGene00011145 | |||||||
| NDB | locus_tag | CELE_R08D7.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011145|UniProtKB=P30644 | |||||||
| family | PTHR23050 | ||||||||
| NCBI | gene | 187699 | |||||||
| RefSeq | protein | NM_066585.4 | |||||||
| SwissProt | UniProtAcc | P30644 | |||||||
| TREEFAM | TREEFAM_ID | TF101141 | |||||||
| UniProt_GCRP | UniProtAcc | P30644 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar01500260 | ||||||||
| WBVar01629176 | |||||||||
| WBVar00404421 | |||||||||
| WBVar01499774 | |||||||||
| WBVar00847844 | |||||||||
| WBVar00847845 | |||||||||
| WBVar00847846 | |||||||||
| WBVar00847847 | |||||||||
| WBVar00847848 | |||||||||
| WBVar00847849 | |||||||||
| WBVar00847850 | |||||||||
| WBVar00847851 | |||||||||
| WBVar00847852 | |||||||||
| WBVar00847853 | |||||||||
| WBVar00847854 | |||||||||
| WBVar00252249 | |||||||||
| WBVar01723077 | |||||||||
| WBVar01918653 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00040867 | ||||||||
| 00040868 | |||||||||
| 00040869 | |||||||||
| 00040870 | |||||||||
| 00040871 | |||||||||
| 00118427 | |||||||||
| Contained_in_operon | CEOP3560 | ||||||||
| Ortholog (33) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in centriole replication and mitotic cell cycle. Predicted to be located in centriole and centrosome. Is an ortholog of human CETN2 (centrin 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R08D7.5 | |||||||
| Corresponding_CDS_history | R08D7.5:wp94 | ||||||||
| R08D7.5:wp254 | |||||||||
| Corresponding_transcript | R08D7.5.1 | ||||||||
| Other_sequence | CR07119 | ||||||||
| Tcir_isotig19422 | |||||||||
| CR06507 | |||||||||
| Tcir_isotig22403 | |||||||||
| CBC16009_1 | |||||||||
| CRC04685_1 | |||||||||
| Associated_feature (2) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00051545 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034749 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062334 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017586 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114653 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005229 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr37 | ||||||||
| Expr1020303 | |||||||||
| Expr1034902 | |||||||||
| Expr1155223 | |||||||||
| Expr2005492 | |||||||||
| Expr2023712 | |||||||||
| Drives_construct | WBCnstr00030895 | ||||||||
| Construct_product | WBCnstr00030895 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (118) | |||||||||
| SAGE_tag | SAGE:aagaagactt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:atttcaaaaa | Strand | Antisense | |||||||
| SAGE:atctctaattataatcc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gacgttgacgaactgtg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:atctctaatt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gtgatatgag | Strand | Antisense | |||||||
| SAGE:taatccttct | Strand | Antisense | |||||||
| SAGE:atttcaaaaaactgttg | Strand | Antisense | |||||||
| SAGE:gagagaagga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gacgttgacg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (14) | |||||||||
| Map_info | Positive | Positive_clone | R08D7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 0.0556967 | |||||||
| Reference | WBPaper00055090 | ||||||||
| Method | Gene |
