WormBase Tree Display for Gene: WBGene00009973
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| WBGene00009973 | SMap | S_parent | Sequence | F53C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | decr-1.1 | Person_evidence | WBPerson261 | |||||
| WBPerson21017 | |||||||||
| Curator_confirmed | WBPerson555 | ||||||||
| Sequence_name | F53C11.3 | ||||||||
| Molecular_name | F53C11.3 | ||||||||
| F53C11.3.1 | |||||||||
| CE10908 | |||||||||
| Other_name | CELE_F53C11.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | decr-1.1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 20 Jan 2023 19:20:32 | WBPerson51134 | Name_change | CGC_name | decr-1.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | decr | ||||||||
| Allele | WBVar01809043 | ||||||||
| WBVar00475612 | |||||||||
| WBVar00475613 | |||||||||
| WBVar02151457 | |||||||||
| WBVar02107383 | |||||||||
| WBVar02107384 | |||||||||
| WBVar01462665 | |||||||||
| WBVar02137456 | |||||||||
| WBVar01842629 | |||||||||
| WBVar01842630 | |||||||||
| WBVar01842631 | |||||||||
| WBVar01842632 | |||||||||
| WBVar01063432 | |||||||||
| WBVar01063433 | |||||||||
| WBVar01063434 | |||||||||
| WBVar01063435 | |||||||||
| WBVar01063436 | |||||||||
| WBVar01063437 | |||||||||
| WBVar01063438 | |||||||||
| WBVar01063439 | |||||||||
| WBVar01063440 | |||||||||
| WBVar01063441 | |||||||||
| WBVar01063442 | |||||||||
| WBVar01063443 | |||||||||
| WBVar01499621 | |||||||||
| WBVar00590676 | |||||||||
| WBVar00601151 | |||||||||
| WBVar02082818 | |||||||||
| WBVar01500212 | |||||||||
| WBVar01500213 | |||||||||
| WBVar01499299 | |||||||||
| WBVar01499316 | |||||||||
| Strain | WBStrain00003032 | ||||||||
| WBStrain00037760 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (6) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00011467 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012177 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable 2,4-dienoyl-CoA reductase (NADPH) activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in mitochondrion. Is an ortholog of human DECR1 (2,4-dienoyl-CoA reductase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53C11.3 | |||||||
| Corresponding_transcript | F53C11.3.1 | ||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf647484 | ||||||||
| WBsf232826 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00065103 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048101 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032682 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102263 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015489 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram809 | ||||||||
| Expr6148 | |||||||||
| Expr1022771 | |||||||||
| Expr1034344 | |||||||||
| Expr1151911 | |||||||||
| Expr2004046 | |||||||||
| Expr2010840 | |||||||||
| Expr2022270 | |||||||||
| Expr2029078 | |||||||||
| Drives_construct | WBCnstr00003532 | ||||||||
| WBCnstr00031774 | |||||||||
| Construct_product | WBCnstr00031774 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (195) | |||||||||
| Interaction (78) | |||||||||
| Map_info | Map | V | Position | 5.5873 | |||||
| Positive | Positive_clone | F53C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028482 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | Note that CGC_name decr-1.1 was previously incorrectly associated with F43C11.3 | Person_evidence | WBPerson21017 | ||||||
| Curator_confirmed | WBPerson555 | ||||||||
| WBPerson51134 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
