WormBase Tree Display for Gene: WBGene00004476
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| WBGene00004476 | SMap | S_parent | Sequence | ZC434 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rps-7 | |||||||
| Sequence_name | ZC434.2 | ||||||||
| Molecular_name | ZC434.2 | ||||||||
| ZC434.2.1 | |||||||||
| CE06577 | |||||||||
| Other_name | eS7 | Person_evidence | WBPerson555 | ||||||
| CELE_ZC434.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rps-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 17 May 2024 14:24:05 | WBPerson51134 | Name_change | Other_name | eS7 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele | WBVar01499739 | ||||||||
| WBVar01476011 | |||||||||
| WBVar00343705 | |||||||||
| WBVar00343706 | |||||||||
| WBVar00343707 | |||||||||
| WBVar00343708 | |||||||||
| WBVar00343709 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499054 | |||||||||
| WBVar00666015 | |||||||||
| WBVar00666016 | |||||||||
| WBVar00666017 | |||||||||
| WBVar00666018 | |||||||||
| WBVar00666019 | |||||||||
| WBVar00156462 | |||||||||
| WBVar01498959 | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps7 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00074099 | ||||||||
| 00074100 | |||||||||
| 00074101 | |||||||||
| 00074102 | |||||||||
| 00074103 | |||||||||
| 00074104 | |||||||||
| 00107742 | |||||||||
| 00107743 | |||||||||
| 00107744 | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | rps-7 encodes a small ribosomal subunit S7 protein. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in rRNA processing and ribosomal small subunit biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Is an ortholog of human RPS7 (ribosomal protein S7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111881 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10440) | ||||
| Molecular_info | Corresponding_CDS | ZC434.2 | |||||||
| Corresponding_transcript | ZC434.2.1 | ||||||||
| Other_sequence (264) | |||||||||
| Associated_feature | WBsf643670 | ||||||||
| WBsf643671 | |||||||||
| WBsf656857 | |||||||||
| WBsf984976 | |||||||||
| WBsf218413 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Chronogram1455 | ||||||||
| Expr1014525 | |||||||||
| Expr1032279 | |||||||||
| Expr1162350 | |||||||||
| Expr2015531 | |||||||||
| Expr2033766 | |||||||||
| Drives_construct | WBCnstr00035456 | ||||||||
| Construct_product | WBCnstr00035456 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (157) | |||||||||
| Interaction (276) | |||||||||
| Map_info | Map | I | Position | 4.88122 | Error | 0.009981 | |||
| Positive | Positive_clone | ZC434 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004402 | ||||||||
| WBPaper00025088 | |||||||||
| WBPaper00035149 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00063976 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Approved Human ortholog symbol: RPS7 | Person_evidence | WBPerson555 | |||||||
| New system for naming ribosomal proteins name: eS7 | Paper_evidence | WBPaper00066708 | |||||||
| Standard Protein name: RPS-7 | Person_evidence | WBPerson555 | |||||||
| Method | Gene |
