WormBase Tree Display for Gene: WBGene00003421

WBGene00003421 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F09E8
  Identity: Version: 1
    Name: CGC_name: msh-5 Person_evidence: WBPerson1547
      Sequence_name: F09E8.3
      Molecular_name: F09E8.3a
        F09E8.3a.1
        CE26678
        F09E8.3b
        CE49987
        F09E8.3b.1
      Other_name: CELE_F09E8.3 Accession_evidence: NDB BX284604
      Public_name: msh-5
    DB_info: Database: AceView gene 4N927
        WormQTL gene WBGene00003421
        WormFlux gene WBGene00003421
        NDB locus_tag CELE_F09E8.3
        Panther gene CAEEL|WormBase=WBGene00003421|UniProtKB=Q19272
          family PTHR11361
        NCBI gene 178268
        RefSeq protein NM_001380506.1
            NM_070130.8
        SwissProt UniProtAcc Q19272
        UniProt_GCRP UniProtAcc Q19272
        OMIM gene 603382
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:31 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: msh
    Allele: WBVar00088870 Inferred_automatically: From strain object: AV115
      WBVar00088875
      WBVar02158083
      WBVar02158135
      WBVar02158134
      WBVar01398358
      WBVar02037421
      WBVar02037422
      WBVar02037423
      WBVar01500079
      WBVar02037424
      WBVar00439167
      WBVar00439168
      WBVar00439169
      WBVar00439170
      WBVar00439171
      WBVar00439172
      WBVar00439173
      WBVar00439174
      WBVar00439175
      WBVar01454863
      WBVar00439176
      WBVar00439177
      WBVar00244081
      WBVar00439178
      WBVar00439179
      WBVar00439180
      WBVar01498996
      WBVar00439181
      WBVar00439182
      WBVar01499925
      WBVar02090101
      WBVar00952546
      WBVar00952547
      WBVar00952548
      WBVar00952549
      WBVar00952550
      WBVar00952551
      WBVar00952552
      WBVar00952553
      WBVar00952554
      WBVar00952555
      WBVar00952556
      WBVar00952557
      WBVar00952558
      WBVar01967332
      WBVar00952559
      WBVar01967333
      WBVar00952560
      WBVar00952561
      WBVar01967334
      WBVar00952562
      WBVar00952563
      WBVar00952564
      WBVar00952565
      WBVar00952566
      WBVar00952567
      WBVar00952568
      WBVar00952569
      WBVar00952570
      WBVar00952571
      WBVar00952572
      WBVar00952573
      WBVar00952574
      WBVar00952575
      WBVar00952576
      WBVar00952577
      WBVar00952578
      WBVar00952579
      WBVar00952580
      WBVar00952581
      WBVar00952582
      WBVar00952583
      WBVar00952584
      WBVar00952585
      WBVar00952586
      WBVar00952587
      WBVar00952588
      WBVar00952589
      WBVar00952590
      WBVar00952591
      WBVar00952592
      WBVar00952593
      WBVar01859984
      WBVar00952594
      WBVar00952595
      WBVar00952596
      WBVar00952597
      WBVar00952598
      WBVar00952599
      WBVar00952600
      WBVar00952601
      WBVar00952602
      WBVar00952603
      WBVar00952604
      WBVar00952605
      WBVar00952606
      WBVar00952607
      WBVar02134919
      WBVar01796435
      WBVar01796436
      WBVar01796437
      WBVar02110239
      WBVar02110240
      WBVar02003883
      WBVar01796438
      WBVar02042186
      WBVar02042187
      WBVar01804559
      WBVar00193134
      WBVar02042188
      WBVar01804560
      WBVar00193135
      WBVar02042189
      WBVar01804561
      WBVar01731405
      WBVar00193136
      WBVar02042190
      WBVar01731406
      WBVar01804562
      WBVar00193137
      WBVar02042191
      WBVar01731407
      WBVar01482552
      WBVar00193138
      WBVar01804563
      WBVar01804564
      WBVar00193139
      WBVar01482553
      WBVar01731408
      WBVar02042192
      WBVar01804565
      WBVar00193140
      WBVar02042193
      WBVar01804566
      WBVar02042194
      WBVar01581891
      WBVar01804567
      WBVar02042195
      WBVar01804568
      WBVar02042196
      WBVar02042197
      WBVar01804569
      WBVar02042198
      WBVar01804570
      WBVar01804571
      WBVar02042199
      WBVar01804572
      WBVar01804573
      WBVar01499492
      WBVar01804574
      WBVar01499493
      WBVar01804575
      WBVar01804576
      WBVar01804577
      WBVar01804578
      WBVar01804579
      WBVar01804580
      WBVar01804581
      WBVar01688358
      WBVar01804582
      WBVar01804583
      WBVar01804584
      WBVar01804585
      WBVar01804586
      WBVar01804587
      WBVar01804588
      WBVar01804589
      WBVar01500245
    Legacy_information: [Kelly KO, Villeneuve AM ] me23 homozygotes viable hermaphrodite, morphologically normal; 98% of eggs fail to hatch, Him: 42% of viable progeny are male. me45 similar. Cloned: F09E8.3, homologous to budding yeast MSH5.
    Strain: WBStrain00000279
    RNASeq_FPKM (74)
    GO_annotation (20)
    Ortholog (36)
    Paralog: WBGene00001872 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003418 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003422 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description (2)
  Disease_info: Potential_model: DOID:0111910 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:7328)
      DOID:3908 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:7328)
      DOID:0080870 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:7328)
  Molecular_info: Corresponding_CDS: F09E8.3a
      F09E8.3b
    Corresponding_CDS_history: F09E8.3:wp37
    Corresponding_transcript: F09E8.3a.1
      F09E8.3b.1
    Other_sequence: AF070070
      TMC02651_1
      JI167893.1
      BXC01774_1
      TM03704
    Associated_feature: WBsf1018496
      WBsf229395
  Experimental_info: RNAi_result: WBRNAi00030712 Inferred_automatically: RNAi_primary
      WBRNAi00001814 Inferred_automatically: RNAi_primary
      WBRNAi00012983 Inferred_automatically: RNAi_primary
      WBRNAi00012984 Inferred_automatically: RNAi_primary
      WBRNAi00008131 Inferred_automatically: RNAi_primary
      WBRNAi00044136 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10004
      Expr1027885
      Expr1031586
      Expr1148104
      Expr2013767
      Expr2032002
    Drives_construct: WBCnstr00036128
    Construct_product: WBCnstr00036128
    Antibody: WBAntibody00002196
      WBAntibody00003031
    Microarray_results (25)
    Expression_cluster (147)
    Interaction (73)
  Map_info: Map: IV Position: 8.22608 Error: 0.01548
    Well_ordered
    Positive: Positive_clone: F09E8 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4008
        4009
  Reference (41)
  Remark: sequence connection from [Villeneuve AM]
    Sequence connection from [Boulton S, Vidal M]
    Data extracted from Kelly et al. (2000)
    F09E8.2 removed. email from JAH 0109
    Positive_clone is based on mutant sequence [030403 ck1]
  Method: Gene