WormBase Tree Display for Gene: WBGene00021420
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| WBGene00021420 | SMap | S_parent | Sequence | Y38F2AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trap-3 | |||||||
| Sequence_name | Y38F2AR.2 | ||||||||
| Molecular_name | Y38F2AR.2 | ||||||||
| Y38F2AR.2.1 | |||||||||
| CE21634 | |||||||||
| Other_name | Y38F2A_6126.e | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38F2AR.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | trap-3 | ||||||||
| DB_info | Database | AceView | gene | 4D153 | |||||
| WormQTL | gene | WBGene00021420 | |||||||
| WormFlux | gene | WBGene00021420 | |||||||
| NDB | locus_tag | CELE_Y38F2AR.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021420|UniProtKB=Q95XS1 | |||||||
| family | PTHR13399 | ||||||||
| NCBI | gene | 177028 | |||||||
| RefSeq | protein | NM_067797.8 | |||||||
| TREEFAM | TREEFAM_ID | TF314998 | |||||||
| TrEMBL | UniProtAcc | Q95XS1 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XS1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Oct 2007 11:57:48 | WBPerson2970 | Name_change | CGC_name | trap-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trap | ||||||||
| Allele | WBVar01499166 | ||||||||
| WBVar01649307 | |||||||||
| WBVar01772006 | |||||||||
| WBVar01498316 | |||||||||
| WBVar01499633 | |||||||||
| WBVar01803459 | |||||||||
| WBVar00892453 | |||||||||
| WBVar00892454 | |||||||||
| WBVar00892455 | |||||||||
| WBVar00892456 | |||||||||
| WBVar00892457 | |||||||||
| WBVar00892458 | |||||||||
| WBVar00892459 | |||||||||
| WBVar00892460 | |||||||||
| WBVar00892461 | |||||||||
| WBVar00892462 | |||||||||
| WBVar00892463 | |||||||||
| WBVar00419270 | |||||||||
| WBVar01500062 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089303 | ||||||||
| 00089304 | |||||||||
| 00089305 | |||||||||
| 00089306 | |||||||||
| 00089307 | |||||||||
| 00125784 | |||||||||
| 00125785 | |||||||||
| Contained_in_operon | CEOP4684 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in endoplasmic reticulum. Is an ortholog of human SSR3 (signal sequence receptor subunit 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38F2AR.2 | |||||||
| Corresponding_transcript | Y38F2AR.2.1 | ||||||||
| Other_sequence | HC05115 | ||||||||
| CRC04664_1 | |||||||||
| OOC03042_1 | |||||||||
| NBC03440_1 | |||||||||
| BU087370.1 | |||||||||
| EX010402.1 | |||||||||
| HC04173 | |||||||||
| EX014316.1 | |||||||||
| ES411930.1 | |||||||||
| EX915121.1 | |||||||||
| EG025477.1 | |||||||||
| EX915648.1 | |||||||||
| Tcir_isotig07477 | |||||||||
| BU087147.1 | |||||||||
| ACC01536_1 | |||||||||
| PPC02009_1 | |||||||||
| PP00209 | |||||||||
| EX914489.1 | |||||||||
| ES739872.1 | |||||||||
| HCC06568_1 | |||||||||
| ES410594.1 | |||||||||
| HBC18925_1 | |||||||||
| CGC00371_1 | |||||||||
| XI02090 | |||||||||
| CGC00936_1 | |||||||||
| CJC00389_1 | |||||||||
| EX910945.1 | |||||||||
| HCC01428_1 | |||||||||
| HBC02830_1 | |||||||||
| EW742476.1 | |||||||||
| Name_isotig01826 | |||||||||
| AYC00226_1 | |||||||||
| Oden_isotig21526 | |||||||||
| EX914744.1 | |||||||||
| NB09730 | |||||||||
| Tcir_isotig17196 | |||||||||
| XIC00734_1 | |||||||||
| Acan_isotig12973 | |||||||||
| ES744151.1 | |||||||||
| Dviv_isotig22705 | |||||||||
| NB08883 | |||||||||
| CB043331.1 | |||||||||
| EX012014.1 | |||||||||
| Hbac_isotig03232 | |||||||||
| EX552274.1 | |||||||||
| AE01326 | |||||||||
| CBC00440_1 | |||||||||
| EX551523.1 | |||||||||
| Tcol_isotig14755 | |||||||||
| HC03209 | |||||||||
| EX915370.1 | |||||||||
| NAC01614_1 | |||||||||
| AE01490 | |||||||||
| EW742150.1 | |||||||||
| EX914658.1 | |||||||||
| TDC00246_1 | |||||||||
| CR12494 | |||||||||
| EX007127.1 | |||||||||
| CR02249 | |||||||||
| ES413434.1 | |||||||||
| ES741272.1 | |||||||||
| DN191058.1 | |||||||||
| Associated_feature | WBsf047621 | ||||||||
| WBsf645839 | |||||||||
| WBsf659985 | |||||||||
| WBsf981689 | |||||||||
| WBsf995676 | |||||||||
| WBsf995677 | |||||||||
| WBsf1016895 | |||||||||
| WBsf228019 | |||||||||
| WBsf228020 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020302 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056050 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020306 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014193 | ||||||||
| Expr1039356 | |||||||||
| Expr1159574 | |||||||||
| Expr2017483 | |||||||||
| Expr2035622 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (178) | |||||||||
| Interaction | WBInteraction000174507 | ||||||||
| WBInteraction000174518 | |||||||||
| WBInteraction000174519 | |||||||||
| WBInteraction000559582 | |||||||||
| WBInteraction000572029 | |||||||||
| WBInteraction000582724 | |||||||||
| WBInteraction000583528 | |||||||||
| WBInteraction000585750 | |||||||||
| Map_info | Map | IV | Position | -7.60168 | Error | 0.036956 | |||
| Positive | Positive_clone | Y38F2AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00047692 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065356 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
